HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:20.1 nTPM
HPA Brain:15.0 nTPM
GTEx:20.1 nTPM
FANTOM5:53.7 Scaled Tags Per Million
Pig:23.6 nTPM
Mouse:6.7 nTPM
Allen mouse:7.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001862
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 15.0
Sample id Sample description nTPM
Hippocampus
nTPM: 14.2
2529 Female, age 94, left hemisphere 18.9
2621 Female, age 67, right hemisphere 14.7
2148 Female, age 91, left hemisphere 13.9
1898 Male, age 80, left hemisphere 13.3
1855 Male, age 76, left hemisphere 12.7
1911 Female, age 85, right hemisphere 11.5
Dentate gyrus
nTPM: 11.6
2010 Male, age 76, both hemispheres 15.9
2528 Male, age 74, both hemispheres 11.2
2246 Female, age 85, both hemispheres 11.1
2531 Female, age 67, both hemispheres 10.8
2530 Female, age 94, left hemisphere 10.6
1927 Female, age 91, both hemispheres 10.0
Entorhinal gyrus
nTPM: 12.8
2117 Female, age 91, right hemisphere 18.8
1787 Male, age 76, left hemisphere 14.5
2764 Male, age 80, right hemisphere 12.7
1938 Female, age 85, left hemisphere 11.0
2686 Male, age 75, right hemisphere 10.0
2613 Female, age 94, left hemisphere 9.9
Hippocampus, CA1
nTPM: 11.5
2045 Male, age 76, both hemispheres 14.1
2082 Female, age 91, right hemisphere 14.1
2527 Male, age 74, both hemispheres 11.8
1873 Female, age 85, both hemispheres 9.1
2749 Male, age 80, left hemisphere 8.5
Hippocampus, CA2
nTPM: 13.8
2249 Male, age 74, both hemispheres 16.0
1940 Female, age 85, left hemisphere 14.8
1892 Male, age 76, both hemispheres 14.1
2113 Female, age 91, right hemisphere 13.9
2437 Female, age 94, left hemisphere 13.5
1963 Male, age 80, left hemisphere 10.5
Hippocampus, CA3
nTPM: 11.4
1867 Male, age 76, both hemispheres 15.0
2861 Female, age 67, both hemispheres 13.5
1891 Female, age 85, both hemispheres 12.2
2620 Female, age 94, left hemisphere 10.1
2436 Male, age 74, both hemispheres 9.6
2137 Male, age 80, left hemisphere 8.4
Parahippocampal cortex
nTPM: 12.4
2018 Male, age 76, both hemispheres 15.0
1850 Male, age 80, both hemispheres 14.1
2532 Female, age 72, left hemisphere 13.9
2250 Female, age 67, right hemisphere 13.3
1990 Female, age 91, right hemisphere 12.7
2245 Female, age 91, both hemispheres 12.2
2692 Male, age 74, both hemispheres 11.5
1933 Female, age 85, both hemispheres 11.0
2622 Female, age 67, right hemisphere 10.4
2693 Female, age 94, both hemispheres 9.9
Perirhinal gyrus
nTPM: 12.0
1794 Male, age 80, right hemisphere 13.7
1847 Female, age 91, left hemisphere 13.3
2848 Male, age 76, right hemisphere 13.0
2521 Female, age 94, right hemisphere 10.3
1841 Female, age 85, right hemisphere 9.7
Subiculum
nTPM: 15.0
2042 Male, age 76, both hemispheres 19.0
2438 Female, age 94, left hemisphere 16.5
2729 Female, age 91, right hemisphere 15.4
2619 Male, age 74, both hemispheres 14.4
1977 Female, age 85, both hemispheres 13.2
1901 Male, age 80, both hemispheres 11.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.1
Samples: 197

Max nTPM: 69.8
Min nTPM: 6.9
Std nTPM: 8.7
Median nTPM: 18.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 69.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 68.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 58.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 55.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 43.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 41.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 37.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 34.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 33.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 32.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 30.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 53.7
FF:10169-103B7 60 years, female 55.0
FF:10153-102I9 76 years, female 52.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.6
Pig sample Sample description nTPM
Subiculum
nTPM: 23.3
Samples: 4

Max nTPM: 27.4
Min nTPM: 17.8
Sample A Female 27.4
Sample B Female 17.8
Sample C Male 20.8
Sample D Male 27.3
Dorsal hippocampus
nTPM: 23.6
Samples: 4

Max nTPM: 26.4
Min nTPM: 17.7
Sample A Female 26.4
Sample B Female 17.7
Sample C Male 25.6
Sample D Male 24.5
Entorhinal cortex
nTPM: 20.6
Samples: 4

Max nTPM: 24.5
Min nTPM: 17.3
Sample A Female 24.5
Sample B Female 17.3
Sample C Male 19.0
Sample D Male 21.6
Ventral hippocampus
nTPM: 23.4
Samples: 4

Max nTPM: 25.9
Min nTPM: 18.0
Sample A Female 25.0
Sample B Female 18.0
Sample C Male 25.9
Sample D Male 24.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.7
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.0
Sample A Male 6.5
Sample B Male 7.6
Sample C Female 6.6
Sample D Female 6.0
Hippocampal formation
nTPM: 6.5
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.8
Sample A Male 5.8
Sample B Male 6.2
Sample C Female 6.5
Sample D Female 7.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.4
2329 Antisense, RP_040526_02_B03, Mouse strain C57BL/6J (56 days, male) 7.4
2330 Antisense, RP_040526_02_B03, Mouse strain C57BL/6J (56 days, male) 3.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org