MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.7 nTPM
HPA Brain:23.9 nTPM
GTEx:25.7 nTPM
FANTOM5:61.9 Scaled Tags Per Million
Pig:40.0 nTPM
Mouse:7.5 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.6
2666 Male, age 74, left hemisphere 24.4
2586 Male, age 75, left hemisphere 24.2
1870 Female, age 42, unknown 22.9
2828 Female, age 72, unknown 20.0
1827 Male, age 72, unknown 19.8
1833 Male, age 53, unknown 19.8
1830 Male, age 51, unknown 17.5
2411 Female, age 72, unknown 13.8
2019 Male, age 18, unknown 12.7
2219 Male, age 76, both hemispheres 10.8
Dorsal raphe nucleus
nTPM: 23.9
1828 Male, age 53, unknown 28.5
2016 Female, age 72, unknown 26.1
2047 Male, age 72, unknown 24.8
2298 Female, age 72, unknown 22.1
2750 Male, age 76, both hemispheres 17.9
Inferior colliculus
nTPM: 16.2
1848 Female, age 42, unknown 20.3
2849 Male, age 72, unknown 19.4
2097 Female, age 72, unknown 14.0
1890 Male, age 53, unknown 11.1
Median raphe nucleus
nTPM: 15.6
2220 Male, age 76, midline 15.6
Periaquaductal grey, anterior
nTPM: 19.4
1795 Male, age 51, unknown 21.7
2502 Female, age 75, unknown 20.0
1947 Male, age 18, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 17.0
2850 Male, age 76, both hemispheres 19.7
1831 Male, age 72, unknown 16.8
2464 Female, age 72, unknown 16.4
1840 Male, age 53, unknown 15.2
Periaquaductal grey, lateral
nTPM: 19.5
2272 Male, age 74, both hemispheres 20.0
2053 Male, age 18, unknown 19.9
2140 Male, age 76, both hemispheres 18.6
Pretectal area
nTPM: 16.3
2825 Male, age 18, unknown 21.9
2224 Female, age 72, unknown 19.1
2316 Male, age 76, right hemisphere 18.5
1817 Female, age 42, unknown 17.8
2667 Female, age 75, unknown 17.5
2273 Male, age 74, both hemispheres 16.5
1944 Female, age 72, unknown 15.9
1815 Male, age 53, unknown 14.8
2407 Male, age 75, both hemispheres 12.6
1816 Male, age 51, unknown 12.3
2007 Male, age 72, unknown 11.7
Red nucleus
nTPM: 19.0
1821 Female, age 72, unknown 21.4
1954 Female, age 42, unknown 20.6
2584 Male, age 75, left hemisphere 20.6
1904 Male, age 53, unknown 20.1
2503 Female, age 72, unknown 20.1
2823 Male, age 76, right hemisphere 19.8
2769 Male, age 72, unknown 19.0
2227 Male, age 72, unknown 17.9
1865 Male, age 51, unknown 17.7
2725 Female, age 75, unknown 17.6
2588 Male, age 74, left hemisphere 17.3
2785 Male, age 18, unknown 15.4
Substantia nigra
nTPM: 17.2
2699 Male, age 18, unknown 24.6
1916 Female, age 42, unknown 19.2
2409 Female, age 72, unknown 19.2
2665 Male, age 74, both hemispheres 17.9
1851 Male, age 51, unknown 17.8
2590 Female, age 75, unknown 16.3
2241 Male, age 72, unknown 15.4
1889 Female, age 72, unknown 14.5
2583 Male, age 75, right hemisphere 13.5
1941 Male, age 53, unknown 13.1
Superior colliculus
nTPM: 16.3
1796 Male, age 53, unknown 21.5
1839 Male, age 51, unknown 18.4
2587 Male, age 74, left hemisphere 18.2
1895 Male, age 76, right hemisphere 18.0
1995 Male, age 72, unknown 17.6
1913 Female, age 42, unknown 15.9
2261 Male, age 18, unknown 15.6
2668 Female, age 75, unknown 15.6
2664 Male, age 75, both hemispheres 13.0
2087 Female, age 72, unknown 8.9
Ventral tegmental area
nTPM: 17.9
2223 Female, age 72, unknown 20.7
2021 Male, age 53, unknown 20.0
1942 Male, age 51, unknown 18.4
1915 Female, age 42, unknown 17.9
2218 Male, age 76, both hemispheres 16.3
2410 Female, age 72, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 63.8
Min nTPM: 8.7
Std nTPM: 8.4
Median nTPM: 24.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 63.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 58.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 47.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 43.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 43.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 42.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 42.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 41.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 39.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 37.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.9
FF:10158-103A5 76 years, female 61.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.0
Samples: 4

Max nTPM: 47.1
Min nTPM: 35.4
Sample A Female 38.7
Sample B Female 35.4
Sample C Male 38.7
Sample D Male 47.1
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 45.1
Min nTPM: 23.5
Sample A Female 45.1
Sample B Female 30.0
Sample C Male 23.5
Sample D Male 35.8
Periaqueductal gray
nTPM: 37.6
Samples: 3

Max nTPM: 42.1
Min nTPM: 29.6
Sample B Female 29.6
Sample C Male 42.1
Sample D Male 41.2
Superior colliculi
nTPM: 35.0
Samples: 4

Max nTPM: 46.4
Min nTPM: 24.6
Sample A Female 46.4
Sample B Female 29.3
Sample C Male 24.6
Sample D Male 39.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.9
Sample A Male 7.5
Sample B Male 6.9
Sample C Female 7.2
Sample D Female 8.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
2329 Antisense, RP_040526_02_B03, Mouse strain C57BL/6J (56 days, male) 5.3
2330 Antisense, RP_040526_02_B03, Mouse strain C57BL/6J (56 days, male) 1.9

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