MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.9 nTPM
HPA Brain:85.0 nTPM
GTEx:70.9 nTPM
FANTOM5:95.6 Scaled Tags Per Million
Pig:45.5 nTPM
Mouse:13.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.5
2828 Female, age 72, unknown 78.7
2019 Male, age 18, unknown 74.2
2586 Male, age 75, left hemisphere 67.3
1870 Female, age 42, unknown 64.2
2411 Female, age 72, unknown 63.5
1830 Male, age 51, unknown 63.4
1833 Male, age 53, unknown 61.1
2666 Male, age 74, left hemisphere 53.1
1827 Male, age 72, unknown 48.3
2219 Male, age 76, both hemispheres 30.8
Dorsal raphe nucleus
nTPM: 50.9
2016 Female, age 72, unknown 61.3
2750 Male, age 76, both hemispheres 53.9
1828 Male, age 53, unknown 52.3
2298 Female, age 72, unknown 47.9
2047 Male, age 72, unknown 39.1
Inferior colliculus
nTPM: 39.0
1848 Female, age 42, unknown 41.8
1890 Male, age 53, unknown 41.0
2849 Male, age 72, unknown 38.5
2097 Female, age 72, unknown 34.8
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Periaquaductal grey, anterior
nTPM: 49.8
2502 Female, age 75, unknown 56.2
1947 Male, age 18, unknown 46.6
1795 Male, age 51, unknown 46.4
Periaquaductal grey, dorsal
nTPM: 41.0
2464 Female, age 72, unknown 51.2
1831 Male, age 72, unknown 43.6
2850 Male, age 76, both hemispheres 37.5
1840 Male, age 53, unknown 32.0
Periaquaductal grey, lateral
nTPM: 51.5
2272 Male, age 74, both hemispheres 54.9
2053 Male, age 18, unknown 54.1
2140 Male, age 76, both hemispheres 45.6
Pretectal area
nTPM: 52.3
2316 Male, age 76, right hemisphere 69.7
1815 Male, age 53, unknown 61.9
2273 Male, age 74, both hemispheres 58.1
2667 Female, age 75, unknown 58.1
1817 Female, age 42, unknown 55.6
1944 Female, age 72, unknown 50.0
2825 Male, age 18, unknown 47.7
2007 Male, age 72, unknown 45.3
2224 Female, age 72, unknown 45.3
2407 Male, age 75, both hemispheres 44.2
1816 Male, age 51, unknown 39.2
Red nucleus
nTPM: 85.0
1904 Male, age 53, unknown 101.9
1865 Male, age 51, unknown 99.1
2823 Male, age 76, right hemisphere 96.1
2227 Male, age 72, unknown 91.9
2503 Female, age 72, unknown 91.9
2769 Male, age 72, unknown 89.0
1821 Female, age 72, unknown 81.8
1954 Female, age 42, unknown 81.7
2588 Male, age 74, left hemisphere 78.4
2785 Male, age 18, unknown 75.0
2725 Female, age 75, unknown 71.1
2584 Male, age 75, left hemisphere 61.5
Substantia nigra
nTPM: 61.7
2583 Male, age 75, right hemisphere 73.6
2409 Female, age 72, unknown 73.5
2590 Female, age 75, unknown 69.9
1851 Male, age 51, unknown 69.6
2699 Male, age 18, unknown 67.9
2241 Male, age 72, unknown 58.8
2665 Male, age 74, both hemispheres 58.8
1916 Female, age 42, unknown 50.6
1889 Female, age 72, unknown 47.4
1941 Male, age 53, unknown 47.3
Superior colliculus
nTPM: 57.3
1995 Male, age 72, unknown 84.2
1913 Female, age 42, unknown 73.7
2664 Male, age 75, both hemispheres 55.4
1796 Male, age 53, unknown 54.9
2087 Female, age 72, unknown 54.8
1839 Male, age 51, unknown 54.5
2587 Male, age 74, left hemisphere 53.6
2261 Male, age 18, unknown 48.9
1895 Male, age 76, right hemisphere 47.4
2668 Female, age 75, unknown 45.4
Ventral tegmental area
nTPM: 58.0
2410 Female, age 72, unknown 73.4
2021 Male, age 53, unknown 57.9
1915 Female, age 42, unknown 57.4
1942 Male, age 51, unknown 57.4
2223 Female, age 72, unknown 51.0
2218 Male, age 76, both hemispheres 50.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.9
Samples: 139

Max nTPM: 175.6
Min nTPM: 10.3
Std nTPM: 27.1
Median nTPM: 65.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 175.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 141.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 134.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 128.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 127.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 121.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 120.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 117.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 113.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 113.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 112.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.6
FF:10158-103A5 76 years, female 95.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.7
Samples: 4

Max nTPM: 56.7
Min nTPM: 32.8
Sample A Female 40.5
Sample B Female 56.7
Sample C Male 32.8
Sample D Male 40.7
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 51.6
Min nTPM: 22.5
Sample A Female 51.6
Sample B Female 33.1
Sample C Male 26.4
Sample D Male 22.5
Periaqueductal gray
nTPM: 28.0
Samples: 3

Max nTPM: 29.1
Min nTPM: 25.9
Sample B Female 29.0
Sample C Male 29.1
Sample D Male 25.9
Superior colliculi
nTPM: 45.5
Samples: 4

Max nTPM: 71.0
Min nTPM: 28.4
Sample A Female 49.7
Sample B Female 71.0
Sample C Male 28.4
Sample D Male 32.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.6
Sample A Male 13.9
Sample B Male 13.0
Sample C Female 12.6
Sample D Female 14.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69980160 Antisense, RP_050512_04_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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