MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA Brain:44.0 nTPM
GTEx:24.1 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:44.5 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.8
2586 Male, age 75, left hemisphere 49.5
2828 Female, age 72, unknown 42.0
2019 Male, age 18, unknown 41.9
2411 Female, age 72, unknown 40.9
1827 Male, age 72, unknown 38.5
2219 Male, age 76, both hemispheres 37.7
2666 Male, age 74, left hemisphere 37.6
1833 Male, age 53, unknown 37.3
1870 Female, age 42, unknown 36.2
1830 Male, age 51, unknown 36.1
Dorsal raphe nucleus
nTPM: 38.4
2047 Male, age 72, unknown 41.8
2298 Female, age 72, unknown 38.3
2750 Male, age 76, both hemispheres 37.6
1828 Male, age 53, unknown 37.2
2016 Female, age 72, unknown 37.1
Inferior colliculus
nTPM: 34.9
1890 Male, age 53, unknown 37.0
2097 Female, age 72, unknown 35.7
1848 Female, age 42, unknown 35.0
2849 Male, age 72, unknown 32.1
Median raphe nucleus
nTPM: 35.3
2220 Male, age 76, midline 35.3
Periaquaductal grey, anterior
nTPM: 39.4
1795 Male, age 51, unknown 40.8
2502 Female, age 75, unknown 39.8
1947 Male, age 18, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 36.1
2464 Female, age 72, unknown 38.5
1840 Male, age 53, unknown 37.0
1831 Male, age 72, unknown 36.5
2850 Male, age 76, both hemispheres 32.1
Periaquaductal grey, lateral
nTPM: 34.4
2053 Male, age 18, unknown 36.5
2140 Male, age 76, both hemispheres 34.7
2272 Male, age 74, both hemispheres 32.1
Pretectal area
nTPM: 38.9
1817 Female, age 42, unknown 44.3
2007 Male, age 72, unknown 42.5
2667 Female, age 75, unknown 42.2
1816 Male, age 51, unknown 40.8
1944 Female, age 72, unknown 40.4
1815 Male, age 53, unknown 38.4
2224 Female, age 72, unknown 37.4
2316 Male, age 76, right hemisphere 37.4
2825 Male, age 18, unknown 36.5
2407 Male, age 75, both hemispheres 36.3
2273 Male, age 74, both hemispheres 31.3
Red nucleus
nTPM: 41.0
2588 Male, age 74, left hemisphere 48.2
1821 Female, age 72, unknown 43.8
1904 Male, age 53, unknown 43.6
2785 Male, age 18, unknown 41.5
2769 Male, age 72, unknown 41.2
1954 Female, age 42, unknown 40.5
1865 Male, age 51, unknown 40.3
2503 Female, age 72, unknown 40.3
2584 Male, age 75, left hemisphere 40.0
2227 Male, age 72, unknown 39.8
2725 Female, age 75, unknown 39.6
2823 Male, age 76, right hemisphere 33.2
Substantia nigra
nTPM: 44.0
1916 Female, age 42, unknown 53.8
1851 Male, age 51, unknown 48.3
2665 Male, age 74, both hemispheres 46.2
2583 Male, age 75, right hemisphere 44.4
1889 Female, age 72, unknown 42.8
1941 Male, age 53, unknown 42.7
2241 Male, age 72, unknown 42.3
2699 Male, age 18, unknown 41.0
2409 Female, age 72, unknown 40.6
2590 Female, age 75, unknown 38.4
Superior colliculus
nTPM: 39.0
2664 Male, age 75, both hemispheres 42.6
1796 Male, age 53, unknown 41.7
2668 Female, age 75, unknown 41.6
2261 Male, age 18, unknown 40.6
2087 Female, age 72, unknown 39.7
1913 Female, age 42, unknown 38.8
1995 Male, age 72, unknown 37.9
2587 Male, age 74, left hemisphere 36.8
1839 Male, age 51, unknown 35.4
1895 Male, age 76, right hemisphere 35.4
Ventral tegmental area
nTPM: 40.4
1915 Female, age 42, unknown 45.0
2410 Female, age 72, unknown 44.4
1942 Male, age 51, unknown 40.9
2218 Male, age 76, both hemispheres 39.6
2021 Male, age 53, unknown 36.7
2223 Female, age 72, unknown 36.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.1
Samples: 139

Max nTPM: 46.9
Min nTPM: 9.6
Std nTPM: 7.0
Median nTPM: 22.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 46.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 44.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 40.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 39.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 36.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 36.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 35.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 35.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 34.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.7
Samples: 4

Max nTPM: 25.2
Min nTPM: 17.3
Sample A Female 25.1
Sample B Female 19.3
Sample C Male 25.2
Sample D Male 17.3
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.5
Min nTPM: 17.0
Sample A Female 22.2
Sample B Female 17.0
Sample C Male 22.5
Sample D Male 18.2
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 20.1
Min nTPM: 14.1
Sample B Female 16.5
Sample C Male 20.1
Sample D Male 14.1
Superior colliculi
nTPM: 20.3
Samples: 4

Max nTPM: 22.0
Min nTPM: 17.7
Sample A Female 22.0
Sample B Female 21.1
Sample C Male 20.4
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 47.1
Min nTPM: 41.9
Sample A Male 46.2
Sample B Male 41.9
Sample C Female 43.0
Sample D Female 47.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
69080067 Antisense, RP_050324_01_H06, Mouse strain C57BL/6J (56 days, male) 7.3

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