MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:382.5 nTPM
HPA Brain:146.3 nTPM
GTEx:382.5 nTPM
FANTOM5:168.0 Scaled Tags Per Million
Pig:271.3 nTPM
Mouse:312.5 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 146.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.1
2411 Female, age 72, unknown 143.1
1870 Female, age 42, unknown 131.7
1833 Male, age 53, unknown 127.0
1830 Male, age 51, unknown 123.8
2019 Male, age 18, unknown 117.4
1827 Male, age 72, unknown 114.1
2586 Male, age 75, left hemisphere 113.3
2828 Female, age 72, unknown 108.0
2666 Male, age 74, left hemisphere 107.8
2219 Male, age 76, both hemispheres 94.8
Dorsal raphe nucleus
nTPM: 103.4
2750 Male, age 76, both hemispheres 143.9
1828 Male, age 53, unknown 101.8
2298 Female, age 72, unknown 100.8
2047 Male, age 72, unknown 85.6
2016 Female, age 72, unknown 84.9
Inferior colliculus
nTPM: 95.4
2097 Female, age 72, unknown 102.7
1890 Male, age 53, unknown 95.9
2849 Male, age 72, unknown 91.6
1848 Female, age 42, unknown 91.2
Median raphe nucleus
nTPM: 116.2
2220 Male, age 76, midline 116.2
Periaquaductal grey, anterior
nTPM: 103.1
1947 Male, age 18, unknown 112.8
2502 Female, age 75, unknown 105.1
1795 Male, age 51, unknown 91.4
Periaquaductal grey, dorsal
nTPM: 80.3
1831 Male, age 72, unknown 87.8
2464 Female, age 72, unknown 84.9
2850 Male, age 76, both hemispheres 81.5
1840 Male, age 53, unknown 67.2
Periaquaductal grey, lateral
nTPM: 79.8
2053 Male, age 18, unknown 86.9
2272 Male, age 74, both hemispheres 79.6
2140 Male, age 76, both hemispheres 72.7
Pretectal area
nTPM: 103.6
1817 Female, age 42, unknown 124.2
1815 Male, age 53, unknown 122.8
2007 Male, age 72, unknown 118.2
1816 Male, age 51, unknown 107.9
2825 Male, age 18, unknown 105.5
2316 Male, age 76, right hemisphere 102.8
2667 Female, age 75, unknown 100.5
1944 Female, age 72, unknown 95.1
2224 Female, age 72, unknown 91.4
2407 Male, age 75, both hemispheres 90.5
2273 Male, age 74, both hemispheres 81.1
Red nucleus
nTPM: 146.3
1821 Female, age 72, unknown 171.9
1865 Male, age 51, unknown 170.4
1904 Male, age 53, unknown 164.0
2503 Female, age 72, unknown 160.3
2227 Male, age 72, unknown 146.8
2769 Male, age 72, unknown 146.0
2588 Male, age 74, left hemisphere 142.7
2725 Female, age 75, unknown 137.9
2823 Male, age 76, right hemisphere 136.2
1954 Female, age 42, unknown 134.7
2785 Male, age 18, unknown 133.0
2584 Male, age 75, left hemisphere 111.7
Substantia nigra
nTPM: 110.8
1851 Male, age 51, unknown 128.8
1889 Female, age 72, unknown 123.9
2583 Male, age 75, right hemisphere 123.0
1916 Female, age 42, unknown 120.0
2665 Male, age 74, both hemispheres 111.2
2409 Female, age 72, unknown 106.1
2699 Male, age 18, unknown 102.7
1941 Male, age 53, unknown 97.6
2590 Female, age 75, unknown 97.4
2241 Male, age 72, unknown 96.8
Superior colliculus
nTPM: 112.2
1913 Female, age 42, unknown 138.4
2587 Male, age 74, left hemisphere 133.3
2668 Female, age 75, unknown 131.7
1995 Male, age 72, unknown 124.4
1796 Male, age 53, unknown 112.6
1895 Male, age 76, right hemisphere 108.9
2261 Male, age 18, unknown 105.2
1839 Male, age 51, unknown 99.0
2087 Female, age 72, unknown 90.0
2664 Male, age 75, both hemispheres 78.4
Ventral tegmental area
nTPM: 120.5
2223 Female, age 72, unknown 141.1
2410 Female, age 72, unknown 139.4
1915 Female, age 42, unknown 118.8
2218 Male, age 76, both hemispheres 118.7
2021 Male, age 53, unknown 106.6
1942 Male, age 51, unknown 98.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 382.5
GTEx sample id Sample description nTPM
304.3363.5437.3175.7616.30100200300400500600700800900
Brain - Substantia nigra
Average nTPM: 382.5
Samples: 139

Max nTPM: 985.4
Min nTPM: 175.7
Std nTPM: 120.2
Median nTPM: 363.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 985.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 891.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 720.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 703.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 679.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 616.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 610.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 607.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 587.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 574.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 569.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.0
FF:10158-103A5 76 years, female 168.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 271.3
Pig sample Sample description nTPM
241.8260.7286.4213.0335.6050100150200250300
 		Substantia nigra
nTPM: 267.5
Samples: 4

Max nTPM: 335.6
Min nTPM: 213.0
Sample A Female 335.6
Sample B Female 213.0
Sample C Male 270.0
Sample D Male 251.4
201.5246.8316.7200.1391.6050100150200250300350
 		Midbrain
nTPM: 271.4
Samples: 4

Max nTPM: 391.6
Min nTPM: 200.1
Sample A Female 391.6
Sample B Female 291.7
Sample C Male 200.1
Sample D Male 202.0
222.8236.5243.1209.0249.6020406080100120140160180200220240
 		Periaqueductal gray
nTPM: 231.7
Samples: 3

Max nTPM: 249.6
Min nTPM: 209.0
Sample B Female 236.5
Sample C Male 249.6
Sample D Male 209.0
233.3253.6276.2201.7314.9020406080100120140160180200220240260280300
 		Superior colliculi
nTPM: 255.9
Samples: 4

Max nTPM: 314.9
Min nTPM: 201.7
Sample A Female 314.9
Sample B Female 201.7
Sample C Male 243.8
Sample D Male 263.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 312.5
Mouse sample Sample description nTPM
302.6308.6318.6286.0309.1050100150200250300
 		Midbrain
nTPM: 312.6
Samples: 4

Max nTPM: 346.9
Min nTPM: 286.0
Sample A Male 346.9
Sample B Male 308.2
Sample C Female 286.0
Sample D Female 309.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
686210 Antisense, RP_040916_01_B06, Mouse strain C57BL/6J (56 days, male) 2.9

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