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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.1
nTPM
Monaco:
103.5
nTPM
Schmiedel:
120.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
53.1
HPA sample
nTPM
gdT-cell nTPM: 37.8
Samples: 6
Max nTPM: 52.9
Min nTPM: 19.6
P10809_1007
19.6
P10809_1022
52.9
P10809_1041
43.5
P10809_1060
41.5
P10809_1077
33.5
P10809_1098
35.6
MAIT T-cell nTPM: 53.2
Samples: 6
Max nTPM: 68.3
Min nTPM: 26.6
P10809_1006
26.6
P10809_1024
58.1
P10809_1043
68.3
P10809_1062
54.4
P10809_1083
44.1
P10809_1097
67.4
Memory CD4 T-cell nTPM: 39.6
Samples: 6
Max nTPM: 51.2
Min nTPM: 26.6
P10809_1014
26.6
P10809_1026
51.2
P10809_1045
46.2
P10809_1064
37.4
P10809_1086
30.7
P10809_1113
45.3
Memory CD8 T-cell nTPM: 36.4
Samples: 5
Max nTPM: 48.6
Min nTPM: 24.2
P10809_1012
24.2
P10809_1027
45.8
P10809_1046
48.6
P10809_1065
29.9
P10809_1111
33.7
Naive CD4 T-cell nTPM: 41.0
Samples: 6
Max nTPM: 56.9
Min nTPM: 25.2
P10809_1015
25.2
P10809_1030
45.6
P10809_1049
56.9
P10809_1068
39.5
P10809_1085
33.2
P10809_1112
45.6
Naive CD8 T-cell nTPM: 37.4
Samples: 6
Max nTPM: 48.1
Min nTPM: 26.2
P10809_1016
26.2
P10809_1031
36.7
P10809_1050
36.0
P10809_1069
48.1
P10809_1087
30.4
P10809_1110
47.1
T-reg nTPM: 34.7
Samples: 6
Max nTPM: 51.2
Min nTPM: 17.1
P10809_1018
24.0
P10809_1037
17.1
P10809_1056
51.2
P10809_1075
41.1
P10809_1094
30.5
P10809_1106
44.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
103.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 87.3
Samples: 4
Max nTPM: 113.7
Min nTPM: 59.4
RHH5202_R3573
105.0
RHH5230_R3602
113.7
RHH5259_R3631
59.4
RHH5288_R3660
71.1
Effector memory CD8 T-cell nTPM: 67.9
Samples: 4
Max nTPM: 76.8
Min nTPM: 57.6
RHH5203_R3574
64.6
RHH5231_R3603
72.6
RHH5260_R3632
57.6
RHH5289_R3661
76.8
MAIT T-cell nTPM: 103.5
Samples: 4
Max nTPM: 114.5
Min nTPM: 93.7
RHH5233_R3605
93.7
RHH5205_R3576
114.5
RHH5262_R3634
112.0
RHH5297_R3663
93.9
Memory CD4 T-cell TFH nTPM: 83.1
Samples: 4
Max nTPM: 105.7
Min nTPM: 66.7
RHH5300_R3666
66.7
RHH5236_R3608
105.7
RHH5265_R3637
69.7
RHH5208_R3579
90.1
Memory CD4 T-cell Th1 nTPM: 71.0
Samples: 4
Max nTPM: 88.0
Min nTPM: 54.3
RHH5210_R3581
77.9
RHH5302_R3668
63.6
RHH5238_R3610
54.3
RHH5267_R3639
88.0
Memory CD4 T-cell Th1/Th17 nTPM: 91.3
Samples: 4
Max nTPM: 99.2
Min nTPM: 70.9
RHH5303_R3669
98.4
RHH5211_R3582
96.5
RHH5239_R3611
70.9
RHH5268_R3640
99.2
Memory CD4 T-cell Th17 nTPM: 77.3
Samples: 4
Max nTPM: 86.0
Min nTPM: 66.1
RHH5304_R3670
86.0
RHH5212_R3583
80.5
RHH5240_R3612
76.6
RHH5269_R3641
66.1
Memory CD4 T-cell Th2 nTPM: 75.3
Samples: 4
Max nTPM: 99.7
Min nTPM: 64.2
RHH5305_R3671
68.0
RHH5213_R3584
99.7
RHH5241_R3613
69.1
RHH5270_R3642
64.2
Naive CD4 T-cell nTPM: 83.2
Samples: 4
Max nTPM: 98.4
Min nTPM: 66.3
RHH5306_R3672
76.2
RHH5214_R3585
91.9
RHH5242_R3614
66.3
RHH5271_R3643
98.4
Naive CD8 T-cell nTPM: 101.6
Samples: 4
Max nTPM: 123.7
Min nTPM: 63.9
RHH5201_R3572
123.7
RHH5229_R3601
63.9
RHH5258_R3630
98.5
RHH5287_R3659
120.1
Non-Vd2 gdTCR nTPM: 65.6
Samples: 4
Max nTPM: 96.0
Min nTPM: 48.5
RHH5235_R3607
48.5
RHH5264_R3636
96.0
RHH5207_R3578
56.0
RHH5299_R3665
61.8
T-reg nTPM: 75.9
Samples: 4
Max nTPM: 89.0
Min nTPM: 58.3
RHH5301_R3667
58.3
RHH5237_R3609
89.0
RHH5266_R3638
84.4
RHH5209_R3580
71.7
Terminal effector memory CD4 T-cell nTPM: 64.1
Samples: 2
Max nTPM: 67.3
Min nTPM: 60.9
RHH5243_R3615
60.9
RHH5272_R3644
67.3
Terminal effector memory CD8 T-cell nTPM: 71.5
Samples: 4
Max nTPM: 76.8
Min nTPM: 67.1
RHH5232_R3604
74.8
RHH5204_R3575
67.1
RHH5261_R3633
67.4
RHH5296_R3662
76.8
Vd2 gdTCR nTPM: 88.7
Samples: 4
Max nTPM: 113.9
Min nTPM: 69.4
RHH5234_R3606
97.3
RHH5206_R3577
74.2
RHH5263_R3635
113.9
RHH5298_R3664
69.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
