MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:174.0 nTPM
HPA Brain:73.4 nTPM
GTEx:174.0 nTPM
FANTOM5:94.4 Scaled Tags Per Million
Mouse:114.8 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.3
2411 Female, age 72, unknown 78.5
1827 Male, age 72, unknown 74.1
1833 Male, age 53, unknown 71.1
1870 Female, age 42, unknown 66.2
1830 Male, age 51, unknown 64.6
2666 Male, age 74, left hemisphere 64.1
2019 Male, age 18, unknown 64.0
2586 Male, age 75, left hemisphere 59.7
2828 Female, age 72, unknown 56.5
2219 Male, age 76, both hemispheres 54.0
Dorsal raphe nucleus
nTPM: 69.7
2298 Female, age 72, unknown 79.1
2750 Male, age 76, both hemispheres 71.8
1828 Male, age 53, unknown 68.0
2047 Male, age 72, unknown 65.4
2016 Female, age 72, unknown 64.1
Inferior colliculus
nTPM: 71.2
2097 Female, age 72, unknown 76.9
2849 Male, age 72, unknown 69.9
1890 Male, age 53, unknown 69.1
1848 Female, age 42, unknown 68.9
Median raphe nucleus
nTPM: 68.9
2220 Male, age 76, midline 68.9
Periaquaductal grey, anterior
nTPM: 73.4
1947 Male, age 18, unknown 77.4
2502 Female, age 75, unknown 76.2
1795 Male, age 51, unknown 66.7
Periaquaductal grey, dorsal
nTPM: 70.9
2850 Male, age 76, both hemispheres 78.0
1840 Male, age 53, unknown 75.3
2464 Female, age 72, unknown 66.9
1831 Male, age 72, unknown 63.3
Periaquaductal grey, lateral
nTPM: 67.1
2140 Male, age 76, both hemispheres 69.4
2272 Male, age 74, both hemispheres 68.1
2053 Male, age 18, unknown 63.8
Pretectal area
nTPM: 69.4
1816 Male, age 51, unknown 79.9
1817 Female, age 42, unknown 79.3
1815 Male, age 53, unknown 71.9
2007 Male, age 72, unknown 71.5
2667 Female, age 75, unknown 71.5
2825 Male, age 18, unknown 70.1
2273 Male, age 74, both hemispheres 68.9
1944 Female, age 72, unknown 68.2
2224 Female, age 72, unknown 65.1
2316 Male, age 76, right hemisphere 63.8
2407 Male, age 75, both hemispheres 53.2
Red nucleus
nTPM: 70.2
1821 Female, age 72, unknown 91.1
2503 Female, age 72, unknown 76.8
1865 Male, age 51, unknown 75.4
2725 Female, age 75, unknown 73.0
1954 Female, age 42, unknown 71.1
2227 Male, age 72, unknown 69.1
1904 Male, age 53, unknown 68.3
2769 Male, age 72, unknown 67.4
2823 Male, age 76, right hemisphere 65.9
2785 Male, age 18, unknown 63.6
2584 Male, age 75, left hemisphere 62.2
2588 Male, age 74, left hemisphere 58.9
Substantia nigra
nTPM: 73.0
1916 Female, age 42, unknown 83.3
2409 Female, age 72, unknown 76.8
1889 Female, age 72, unknown 76.0
1851 Male, age 51, unknown 74.8
2699 Male, age 18, unknown 74.3
2241 Male, age 72, unknown 73.7
1941 Male, age 53, unknown 72.2
2665 Male, age 74, both hemispheres 71.1
2590 Female, age 75, unknown 65.3
2583 Male, age 75, right hemisphere 62.3
Superior colliculus
nTPM: 66.6
2587 Male, age 74, left hemisphere 79.5
2261 Male, age 18, unknown 70.6
1995 Male, age 72, unknown 69.7
1895 Male, age 76, right hemisphere 69.0
1913 Female, age 42, unknown 67.5
1796 Male, age 53, unknown 66.1
2668 Female, age 75, unknown 65.5
1839 Male, age 51, unknown 64.1
2087 Female, age 72, unknown 62.4
2664 Male, age 75, both hemispheres 51.2
Ventral tegmental area
nTPM: 73.4
2410 Female, age 72, unknown 87.3
2223 Female, age 72, unknown 75.7
1915 Female, age 42, unknown 74.8
2218 Male, age 76, both hemispheres 72.7
2021 Male, age 53, unknown 65.1
1942 Male, age 51, unknown 64.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 174.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.0
Samples: 139

Max nTPM: 331.4
Min nTPM: 116.7
Std nTPM: 37.4
Median nTPM: 166.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 331.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 313.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 272.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 260.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 260.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 259.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 256.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 254.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 247.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 234.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 232.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.4
FF:10158-103A5 76 years, female 94.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.8
Samples: 4

Max nTPM: 134.6
Min nTPM: 96.9
Sample A Male 134.6
Sample B Male 105.0
Sample C Female 96.9
Sample D Female 122.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
678717 Antisense, RP_040914_02_G10, Mouse strain C57BL/6J (56 days, male) 2.7

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