BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:6.6 nTPM
GTEx:16.1 nTPM

CAUDATE - Antibody stainingi
Antibody HPA053611
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.7
1781 Male, age 74, unknown 6.3
1854 Male, age 80, left hemisphere 4.3
2289 Male, age 61, right hemisphere 4.3
2481 Female, age 94, left hemisphere 3.4
2288 Male, age 75, left hemisphere 2.9
2290 Female, age 72, unknown 2.9
2846 Female, age 79, unknown 2.8
1857 Female, age 85, left hemisphere 2.6
Globus pallidus, externus
nTPM: 4.8
2646 Male, age 61, right hemisphere 6.7
2567 Female, age 72, unknown 6.3
2395 Male, age 75, both hemispheres 3.7
2772 Female, age 79, unknown 3.7
1996 Male, age 80, right hemisphere 3.6
Globus pallidus, internus
nTPM: 3.7
2566 Female, age 72, unknown 4.8
2037 Male, age 80, right hemisphere 4.1
2778 Female, age 91, both hemispheres 4.1
1818 Male, age 74, unknown 3.8
2483 Female, age 94, right hemisphere 3.2
2111 Female, age 85, right hemisphere 2.9
2287 Male, age 75, right hemisphere 2.9
Nucleus accumbens
nTPM: 3.8
2732 Male, age 80, right hemisphere 4.8
2391 Female, age 94, left hemisphere 4.4
1856 Female, age 91, right hemisphere 4.3
2824 Male, age 61, right hemisphere 4.2
1783 Male, age 74, unknown 3.8
2286 Male, age 75, left hemisphere 3.7
2698 Female, age 72, unknown 3.1
1806 Female, age 85, left hemisphere 2.3
Nucleus basalis of Meynert
nTPM: 4.1
2393 Male, age 80, right hemisphere 4.7
2569 Male, age 61, both hemispheres 4.6
2821 Male, age 75, both hemispheres 4.2
2484 Female, age 94, left hemisphere 3.1
Nucleus of the diagonal band
nTPM: 5.6
2029 Male, age 61, right hemisphere 8.5
2195 Female, age 85, both hemispheres 6.1
1979 Male, age 74, unknown 4.6
2775 Male, age 80, right hemisphere 4.4
1812 Female, age 91, both hemispheres 4.2
Putamen
nTPM: 3.7
1838 Male, age 80, right hemisphere 5.2
2466 Female, age 79, unknown 4.8
2647 Male, age 75, left hemisphere 4.2
2489 Female, age 72, unknown 3.5
1829 Male, age 74, unknown 3.3
1937 Female, age 91, right hemisphere 2.8
2482 Female, age 94, left hemisphere 2.2
Septal nuclei
nTPM: 5.3
2059 Female, age 85, both hemispheres 7.1
2009 Female, age 91, both hemispheres 6.0
2031 Female, age 72, unknown 5.2
1960 Male, age 74, unknown 5.0
2394 Male, age 61, left hemisphere 4.9
2629 Female, age 94, right hemisphere 4.4
2199 Male, age 80, right hemisphere 4.1
Stria terminalis, bed nucleus
nTPM: 6.6
2486 Female, age 94, both hemispheres 7.3
2201 Male, age 74, unknown 7.0
1974 Female, age 91, both hemispheres 5.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.5
Samples: 246

Max nTPM: 151.0
Min nTPM: 0.0
Std nTPM: 27.1
Median nTPM: 1.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 151.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 127.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 123.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 100.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 100.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 91.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 84.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 78.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 78.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 77.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 73.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.1
Samples: 246

Max nTPM: 289.1
Min nTPM: 0.0
Std nTPM: 30.4
Median nTPM: 1.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 289.1
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 117.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 112.5
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 101.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 96.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 94.1
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 91.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 85.0
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 83.6
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 82.0
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 79.9
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Brain - Putamen (basal ganglia)
Average nTPM: 16.1
Samples: 205

Max nTPM: 142.8
Min nTPM: 0.0
Std nTPM: 26.8
Median nTPM: 1.5
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 142.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 107.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 99.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 89.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 89.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 89.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 81.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 78.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 73.5
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 73.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 73.0
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