MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA Brain:23.6 nTPM
GTEx:9.9 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:26.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.9
2411 Female, age 72, unknown 26.3
1827 Male, age 72, unknown 23.4
2586 Male, age 75, left hemisphere 21.9
2019 Male, age 18, unknown 21.7
1870 Female, age 42, unknown 21.5
2666 Male, age 74, left hemisphere 21.4
2828 Female, age 72, unknown 21.2
1833 Male, age 53, unknown 21.1
1830 Male, age 51, unknown 20.4
2219 Male, age 76, both hemispheres 20.1
Dorsal raphe nucleus
nTPM: 22.3
2750 Male, age 76, both hemispheres 24.7
2047 Male, age 72, unknown 24.0
2298 Female, age 72, unknown 23.2
1828 Male, age 53, unknown 20.2
2016 Female, age 72, unknown 19.4
Inferior colliculus
nTPM: 20.5
1848 Female, age 42, unknown 21.9
2097 Female, age 72, unknown 21.5
2849 Male, age 72, unknown 19.4
1890 Male, age 53, unknown 19.3
Median raphe nucleus
nTPM: 21.6
2220 Male, age 76, midline 21.6
Periaquaductal grey, anterior
nTPM: 23.5
1947 Male, age 18, unknown 24.6
1795 Male, age 51, unknown 23.5
2502 Female, age 75, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 20.1
1840 Male, age 53, unknown 23.1
2464 Female, age 72, unknown 20.4
1831 Male, age 72, unknown 20.2
2850 Male, age 76, both hemispheres 16.9
Periaquaductal grey, lateral
nTPM: 20.7
2053 Male, age 18, unknown 21.9
2272 Male, age 74, both hemispheres 20.9
2140 Male, age 76, both hemispheres 19.3
Pretectal area
nTPM: 23.1
2007 Male, age 72, unknown 25.6
2667 Female, age 75, unknown 25.3
1816 Male, age 51, unknown 25.2
1944 Female, age 72, unknown 24.5
2407 Male, age 75, both hemispheres 24.1
2224 Female, age 72, unknown 22.7
1815 Male, age 53, unknown 22.2
1817 Female, age 42, unknown 21.8
2825 Male, age 18, unknown 21.7
2316 Male, age 76, right hemisphere 21.0
2273 Male, age 74, both hemispheres 19.8
Red nucleus
nTPM: 20.6
2588 Male, age 74, left hemisphere 21.6
2769 Male, age 72, unknown 21.5
2785 Male, age 18, unknown 21.3
2823 Male, age 76, right hemisphere 21.3
2227 Male, age 72, unknown 20.8
2584 Male, age 75, left hemisphere 20.7
1821 Female, age 72, unknown 20.6
1865 Male, age 51, unknown 20.6
2725 Female, age 75, unknown 20.2
2503 Female, age 72, unknown 19.9
1954 Female, age 42, unknown 19.5
1904 Male, age 53, unknown 19.0
Substantia nigra
nTPM: 23.6
1916 Female, age 42, unknown 28.3
1851 Male, age 51, unknown 25.8
1941 Male, age 53, unknown 24.8
2583 Male, age 75, right hemisphere 24.2
2409 Female, age 72, unknown 23.4
1889 Female, age 72, unknown 23.1
2241 Male, age 72, unknown 22.3
2590 Female, age 75, unknown 21.8
2699 Male, age 18, unknown 21.0
2665 Male, age 74, both hemispheres 20.7
Superior colliculus
nTPM: 21.0
1796 Male, age 53, unknown 23.6
2087 Female, age 72, unknown 23.2
1895 Male, age 76, right hemisphere 22.8
2668 Female, age 75, unknown 21.8
2261 Male, age 18, unknown 21.7
2587 Male, age 74, left hemisphere 21.2
2664 Male, age 75, both hemispheres 20.2
1913 Female, age 42, unknown 19.6
1839 Male, age 51, unknown 19.4
1995 Male, age 72, unknown 16.9
Ventral tegmental area
nTPM: 22.6
1915 Female, age 42, unknown 25.7
2410 Female, age 72, unknown 25.6
2218 Male, age 76, both hemispheres 22.4
2021 Male, age 53, unknown 22.1
1942 Male, age 51, unknown 21.6
2223 Female, age 72, unknown 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.9
Samples: 139

Max nTPM: 19.1
Min nTPM: 2.8
Std nTPM: 3.1
Median nTPM: 9.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 16.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 16.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 15.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 15.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 15.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 15.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 14.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.0
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.8
Sample A Female 25.8
Sample B Female 19.8
Sample C Male 22.0
Sample D Male 20.3
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 25.5
Min nTPM: 20.0
Sample A Female 25.5
Sample B Female 20.0
Sample C Male 21.5
Sample D Male 21.1
Periaqueductal gray
nTPM: 18.4
Samples: 3

Max nTPM: 19.6
Min nTPM: 16.8
Sample B Female 18.7
Sample C Male 19.6
Sample D Male 16.8
Superior colliculi
nTPM: 22.6
Samples: 4

Max nTPM: 24.2
Min nTPM: 20.5
Sample A Female 24.2
Sample B Female 23.5
Sample C Male 20.5
Sample D Male 22.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 24.5
Sample A Male 26.6
Sample B Male 26.4
Sample C Female 26.6
Sample D Female 24.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
631711 Antisense, RP_040907_01_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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