MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:256.6 nTPM
HPA Brain:552.2 nTPM
GTEx:256.6 nTPM
FANTOM5:471.3 Scaled Tags Per Million
Pig:471.3 nTPM
Mouse:579.9 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 552.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 378.6
2219 Male, age 76, both hemispheres 469.6
1827 Male, age 72, unknown 458.3
2666 Male, age 74, left hemisphere 452.9
2411 Female, age 72, unknown 406.0
2828 Female, age 72, unknown 396.7
1833 Male, age 53, unknown 353.4
2019 Male, age 18, unknown 329.1
2586 Male, age 75, left hemisphere 323.7
1870 Female, age 42, unknown 309.6
1830 Male, age 51, unknown 286.6
Dorsal raphe nucleus
nTPM: 314.5
2750 Male, age 76, both hemispheres 386.9
2298 Female, age 72, unknown 382.5
2047 Male, age 72, unknown 296.4
1828 Male, age 53, unknown 276.0
2016 Female, age 72, unknown 230.9
Inferior colliculus
nTPM: 306.1
2097 Female, age 72, unknown 347.9
2849 Male, age 72, unknown 322.0
1890 Male, age 53, unknown 286.8
1848 Female, age 42, unknown 267.7
Median raphe nucleus
nTPM: 552.2
2220 Male, age 76, midline 552.2
Periaquaductal grey, anterior
nTPM: 416.2
1947 Male, age 18, unknown 441.5
1795 Male, age 51, unknown 431.7
2502 Female, age 75, unknown 375.4
Periaquaductal grey, dorsal
nTPM: 318.2
1831 Male, age 72, unknown 356.2
2850 Male, age 76, both hemispheres 331.3
2464 Female, age 72, unknown 294.4
1840 Male, age 53, unknown 291.0
Periaquaductal grey, lateral
nTPM: 280.1
2053 Male, age 18, unknown 292.3
2140 Male, age 76, both hemispheres 279.2
2272 Male, age 74, both hemispheres 268.7
Pretectal area
nTPM: 438.8
1816 Male, age 51, unknown 677.5
1815 Male, age 53, unknown 590.9
1817 Female, age 42, unknown 560.2
1944 Female, age 72, unknown 515.3
2007 Male, age 72, unknown 511.7
2667 Female, age 75, unknown 460.0
2224 Female, age 72, unknown 352.5
2825 Male, age 18, unknown 342.4
2407 Male, age 75, both hemispheres 319.5
2316 Male, age 76, right hemisphere 259.9
2273 Male, age 74, both hemispheres 236.8
Red nucleus
nTPM: 325.3
2725 Female, age 75, unknown 401.2
2584 Male, age 75, left hemisphere 392.9
2588 Male, age 74, left hemisphere 367.8
1821 Female, age 72, unknown 343.5
2785 Male, age 18, unknown 338.0
2503 Female, age 72, unknown 312.4
2823 Male, age 76, right hemisphere 312.3
1904 Male, age 53, unknown 306.9
1954 Female, age 42, unknown 304.7
2769 Male, age 72, unknown 276.0
1865 Male, age 51, unknown 274.7
2227 Male, age 72, unknown 272.8
Substantia nigra
nTPM: 445.0
1916 Female, age 42, unknown 599.0
1851 Male, age 51, unknown 498.9
1889 Female, age 72, unknown 473.8
1941 Male, age 53, unknown 469.3
2665 Male, age 74, both hemispheres 469.1
2241 Male, age 72, unknown 445.1
2699 Male, age 18, unknown 425.3
2409 Female, age 72, unknown 405.8
2583 Male, age 75, right hemisphere 335.6
2590 Female, age 75, unknown 328.5
Superior colliculus
nTPM: 362.6
2087 Female, age 72, unknown 475.8
2261 Male, age 18, unknown 436.2
1796 Male, age 53, unknown 434.6
2668 Female, age 75, unknown 383.6
2664 Male, age 75, both hemispheres 359.2
1913 Female, age 42, unknown 334.9
1895 Male, age 76, right hemisphere 325.1
1839 Male, age 51, unknown 306.0
2587 Male, age 74, left hemisphere 288.2
1995 Male, age 72, unknown 282.2
Ventral tegmental area
nTPM: 426.2
2218 Male, age 76, both hemispheres 588.2
2410 Female, age 72, unknown 487.5
1915 Female, age 42, unknown 436.7
1942 Male, age 51, unknown 386.2
2223 Female, age 72, unknown 334.9
2021 Male, age 53, unknown 323.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 256.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 256.6
Samples: 139

Max nTPM: 705.8
Min nTPM: 108.2
Std nTPM: 115.8
Median nTPM: 225.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 705.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 681.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 603.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 566.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 547.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 534.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 513.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 489.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 488.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 439.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 430.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 471.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 471.3
FF:10158-103A5 76 years, female 471.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 471.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 441.5
Samples: 4

Max nTPM: 673.1
Min nTPM: 243.7
Sample A Female 547.5
Sample B Female 301.6
Sample C Male 673.1
Sample D Male 243.7
Midbrain
nTPM: 471.3
Samples: 4

Max nTPM: 779.5
Min nTPM: 317.2
Sample A Female 317.2
Sample B Female 355.8
Sample C Male 779.5
Sample D Male 432.8
Periaqueductal gray
nTPM: 299.4
Samples: 3

Max nTPM: 368.5
Min nTPM: 251.0
Sample B Female 278.6
Sample C Male 368.5
Sample D Male 251.0
Superior colliculi
nTPM: 463.9
Samples: 4

Max nTPM: 649.9
Min nTPM: 246.9
Sample A Female 459.7
Sample B Female 246.9
Sample C Male 649.9
Sample D Male 498.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 579.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 579.9
Samples: 4

Max nTPM: 600.8
Min nTPM: 562.2
Sample A Male 576.7
Sample B Male 579.8
Sample C Female 600.8
Sample D Female 562.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
1092 Antisense, RP_Baylor_103099, Mouse strain C57BL/6J (56 days, male) 1.9
1093 Antisense, RP_Baylor_103099, Mouse strain C57BL/6J (56 days, male) 0.2

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