MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:125.6 nTPM
GTEx:43.7 nTPM
FANTOM5:93.1 Scaled Tags Per Million
Pig:138.6 nTPM
Mouse:345.4 nTPM
Allen mouse:9.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 125.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.9
2019 Male, age 18, unknown 131.6
2586 Male, age 75, left hemisphere 115.6
1827 Male, age 72, unknown 111.8
2219 Male, age 76, both hemispheres 107.7
2666 Male, age 74, left hemisphere 99.9
1870 Female, age 42, unknown 93.8
2411 Female, age 72, unknown 93.4
1833 Male, age 53, unknown 91.3
1830 Male, age 51, unknown 88.2
2828 Female, age 72, unknown 86.0
Dorsal raphe nucleus
nTPM: 84.9
2298 Female, age 72, unknown 98.2
1828 Male, age 53, unknown 85.7
2047 Male, age 72, unknown 83.2
2750 Male, age 76, both hemispheres 82.6
2016 Female, age 72, unknown 74.7
Inferior colliculus
nTPM: 110.8
2849 Male, age 72, unknown 120.7
1848 Female, age 42, unknown 116.3
2097 Female, age 72, unknown 114.6
1890 Male, age 53, unknown 91.4
Median raphe nucleus
nTPM: 85.5
2220 Male, age 76, midline 85.5
Periaquaductal grey, anterior
nTPM: 106.6
2502 Female, age 75, unknown 112.7
1795 Male, age 51, unknown 104.4
1947 Male, age 18, unknown 102.6
Periaquaductal grey, dorsal
nTPM: 97.1
1840 Male, age 53, unknown 121.4
2464 Female, age 72, unknown 99.3
2850 Male, age 76, both hemispheres 86.2
1831 Male, age 72, unknown 81.6
Periaquaductal grey, lateral
nTPM: 84.3
2272 Male, age 74, both hemispheres 89.6
2140 Male, age 76, both hemispheres 83.7
2053 Male, age 18, unknown 79.7
Pretectal area
nTPM: 125.6
1816 Male, age 51, unknown 174.7
1944 Female, age 72, unknown 170.2
1817 Female, age 42, unknown 168.2
2007 Male, age 72, unknown 161.2
1815 Male, age 53, unknown 131.7
2667 Female, age 75, unknown 117.2
2224 Female, age 72, unknown 99.1
2407 Male, age 75, both hemispheres 96.8
2273 Male, age 74, both hemispheres 93.2
2825 Male, age 18, unknown 85.8
2316 Male, age 76, right hemisphere 84.0
Red nucleus
nTPM: 77.7
2785 Male, age 18, unknown 118.8
2584 Male, age 75, left hemisphere 93.3
2725 Female, age 75, unknown 91.8
1821 Female, age 72, unknown 82.6
2588 Male, age 74, left hemisphere 77.1
1954 Female, age 42, unknown 70.2
1865 Male, age 51, unknown 69.7
2503 Female, age 72, unknown 69.1
2227 Male, age 72, unknown 68.2
2769 Male, age 72, unknown 67.9
1904 Male, age 53, unknown 61.9
2823 Male, age 76, right hemisphere 61.5
Substantia nigra
nTPM: 114.9
1941 Male, age 53, unknown 151.5
1889 Female, age 72, unknown 143.4
2241 Male, age 72, unknown 132.9
2665 Male, age 74, both hemispheres 118.9
2409 Female, age 72, unknown 114.9
1916 Female, age 42, unknown 110.4
1851 Male, age 51, unknown 104.4
2583 Male, age 75, right hemisphere 102.3
2590 Female, age 75, unknown 92.6
2699 Male, age 18, unknown 77.5
Superior colliculus
nTPM: 108.3
2087 Female, age 72, unknown 145.0
1895 Male, age 76, right hemisphere 119.8
2261 Male, age 18, unknown 118.6
1796 Male, age 53, unknown 112.3
1839 Male, age 51, unknown 110.8
2664 Male, age 75, both hemispheres 107.5
2668 Female, age 75, unknown 105.6
1913 Female, age 42, unknown 90.5
2587 Male, age 74, left hemisphere 89.0
1995 Male, age 72, unknown 84.2
Ventral tegmental area
nTPM: 90.3
2223 Female, age 72, unknown 105.8
2410 Female, age 72, unknown 96.9
1915 Female, age 42, unknown 92.7
2218 Male, age 76, both hemispheres 88.8
1942 Male, age 51, unknown 82.7
2021 Male, age 53, unknown 74.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 139

Max nTPM: 172.3
Min nTPM: 16.9
Std nTPM: 20.8
Median nTPM: 39.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 172.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 137.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 117.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 86.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 86.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 86.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 81.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 78.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 74.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 68.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 65.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.1
FF:10158-103A5 76 years, female 93.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 138.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.1
Samples: 4

Max nTPM: 128.4
Min nTPM: 59.5
Sample A Female 128.4
Sample B Female 84.9
Sample C Male 107.4
Sample D Male 59.5
Midbrain
nTPM: 130.9
Samples: 4

Max nTPM: 195.8
Min nTPM: 80.7
Sample A Female 80.7
Sample B Female 95.0
Sample C Male 195.8
Sample D Male 152.2
Periaqueductal gray
nTPM: 92.4
Samples: 3

Max nTPM: 105.7
Min nTPM: 82.9
Sample B Female 88.6
Sample C Male 105.7
Sample D Male 82.9
Superior colliculi
nTPM: 138.6
Samples: 4

Max nTPM: 170.0
Min nTPM: 92.1
Sample A Female 161.3
Sample B Female 92.1
Sample C Male 170.0
Sample D Male 130.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 345.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 345.4
Samples: 4

Max nTPM: 358.6
Min nTPM: 330.5
Sample A Male 330.5
Sample B Male 353.3
Sample C Female 358.6
Sample D Female 339.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.2
70812895 Antisense, RP_050712_02_H01, Mouse strain C57BL/6J (56 days, male) 9.2

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