MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.9 nTPM
HPA Brain:8.9 nTPM
GTEx:3.9 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:6.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.1
2411 Female, age 72, unknown 10.3
1870 Female, age 42, unknown 9.8
1830 Male, age 51, unknown 9.0
1833 Male, age 53, unknown 8.9
2219 Male, age 76, both hemispheres 8.8
1827 Male, age 72, unknown 8.1
2828 Female, age 72, unknown 8.0
2019 Male, age 18, unknown 7.2
2666 Male, age 74, left hemisphere 5.7
2586 Male, age 75, left hemisphere 5.4
Dorsal raphe nucleus
nTPM: 8.1
2016 Female, age 72, unknown 9.5
2750 Male, age 76, both hemispheres 9.0
2298 Female, age 72, unknown 7.5
1828 Male, age 53, unknown 7.2
2047 Male, age 72, unknown 7.2
Inferior colliculus
nTPM: 8.2
1848 Female, age 42, unknown 9.1
2097 Female, age 72, unknown 8.6
1890 Male, age 53, unknown 7.6
2849 Male, age 72, unknown 7.6
Median raphe nucleus
nTPM: 7.0
2220 Male, age 76, midline 7.0
Periaquaductal grey, anterior
nTPM: 7.6
1947 Male, age 18, unknown 8.2
2502 Female, age 75, unknown 8.1
1795 Male, age 51, unknown 6.4
Periaquaductal grey, dorsal
nTPM: 7.7
2464 Female, age 72, unknown 9.0
1840 Male, age 53, unknown 8.2
1831 Male, age 72, unknown 7.6
2850 Male, age 76, both hemispheres 5.9
Periaquaductal grey, lateral
nTPM: 7.9
2053 Male, age 18, unknown 8.6
2272 Male, age 74, both hemispheres 8.0
2140 Male, age 76, both hemispheres 7.0
Pretectal area
nTPM: 7.7
2273 Male, age 74, both hemispheres 9.6
2316 Male, age 76, right hemisphere 9.3
2667 Female, age 75, unknown 8.5
2825 Male, age 18, unknown 8.4
2224 Female, age 72, unknown 7.9
1815 Male, age 53, unknown 7.5
2407 Male, age 75, both hemispheres 7.3
1817 Female, age 42, unknown 6.7
2007 Male, age 72, unknown 6.7
1944 Female, age 72, unknown 6.5
1816 Male, age 51, unknown 5.8
Red nucleus
nTPM: 8.9
1865 Male, age 51, unknown 10.6
1904 Male, age 53, unknown 9.9
1821 Female, age 72, unknown 9.8
2503 Female, age 72, unknown 9.8
2769 Male, age 72, unknown 9.2
2823 Male, age 76, right hemisphere 9.1
1954 Female, age 42, unknown 9.0
2227 Male, age 72, unknown 8.8
2785 Male, age 18, unknown 8.7
2725 Female, age 75, unknown 7.8
2588 Male, age 74, left hemisphere 7.6
2584 Male, age 75, left hemisphere 6.1
Substantia nigra
nTPM: 6.6
2409 Female, age 72, unknown 8.9
1889 Female, age 72, unknown 7.2
2590 Female, age 75, unknown 7.0
1851 Male, age 51, unknown 6.7
2583 Male, age 75, right hemisphere 6.6
2241 Male, age 72, unknown 6.5
2699 Male, age 18, unknown 6.3
1941 Male, age 53, unknown 6.2
1916 Female, age 42, unknown 5.7
2665 Male, age 74, both hemispheres 5.1
Superior colliculus
nTPM: 7.9
1995 Male, age 72, unknown 10.0
1895 Male, age 76, right hemisphere 9.7
1913 Female, age 42, unknown 9.5
1839 Male, age 51, unknown 8.2
2587 Male, age 74, left hemisphere 8.1
1796 Male, age 53, unknown 7.1
2261 Male, age 18, unknown 6.9
2668 Female, age 75, unknown 6.8
2087 Female, age 72, unknown 6.6
2664 Male, age 75, both hemispheres 6.1
Ventral tegmental area
nTPM: 7.4
2410 Female, age 72, unknown 8.3
1942 Male, age 51, unknown 7.7
2021 Male, age 53, unknown 7.6
2223 Female, age 72, unknown 7.3
1915 Female, age 42, unknown 7.2
2218 Male, age 76, both hemispheres 6.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.9
Samples: 139

Max nTPM: 8.3
Min nTPM: 1.2
Std nTPM: 1.2
Median nTPM: 3.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 7.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 7.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 7.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 6.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 5.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 5.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 5.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.1
FF:10158-103A5 76 years, female 25.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 6.7
Sample C Male 5.2
Sample D Male 6.0
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.9
Sample A Female 7.2
Sample B Female 6.6
Sample C Male 4.9
Sample D Male 6.0
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 6.9
Min nTPM: 6.5
Sample B Female 6.8
Sample C Male 6.5
Sample D Male 6.9
Superior colliculi
nTPM: 5.6
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 6.9
Sample C Male 5.1
Sample D Male 5.3

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