MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.2 nTPM
HPA Brain:40.3 nTPM
GTEx:9.2 nTPM
FANTOM5:20.1 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
1827 Male, age 72, unknown 42.8
2666 Male, age 74, left hemisphere 40.1
1830 Male, age 51, unknown 37.3
2219 Male, age 76, both hemispheres 36.9
2586 Male, age 75, left hemisphere 36.4
1833 Male, age 53, unknown 35.8
2411 Female, age 72, unknown 35.7
2828 Female, age 72, unknown 35.4
1870 Female, age 42, unknown 32.7
2019 Male, age 18, unknown 28.5
Dorsal raphe nucleus
nTPM: 33.5
2016 Female, age 72, unknown 38.4
1828 Male, age 53, unknown 33.0
2298 Female, age 72, unknown 32.9
2047 Male, age 72, unknown 31.6
2750 Male, age 76, both hemispheres 31.6
Inferior colliculus
nTPM: 36.0
1890 Male, age 53, unknown 38.0
1848 Female, age 42, unknown 36.8
2849 Male, age 72, unknown 35.5
2097 Female, age 72, unknown 33.7
Median raphe nucleus
nTPM: 35.8
2220 Male, age 76, midline 35.8
Periaquaductal grey, anterior
nTPM: 38.0
1947 Male, age 18, unknown 40.8
2502 Female, age 75, unknown 40.3
1795 Male, age 51, unknown 33.0
Periaquaductal grey, dorsal
nTPM: 36.5
1831 Male, age 72, unknown 39.5
1840 Male, age 53, unknown 35.6
2464 Female, age 72, unknown 35.5
2850 Male, age 76, both hemispheres 35.5
Periaquaductal grey, lateral
nTPM: 38.8
2053 Male, age 18, unknown 40.5
2272 Male, age 74, both hemispheres 39.7
2140 Male, age 76, both hemispheres 36.1
Pretectal area
nTPM: 40.3
1816 Male, age 51, unknown 46.0
2273 Male, age 74, both hemispheres 45.9
1815 Male, age 53, unknown 44.5
2007 Male, age 72, unknown 43.2
1817 Female, age 42, unknown 40.8
1944 Female, age 72, unknown 40.4
2825 Male, age 18, unknown 39.8
2224 Female, age 72, unknown 38.0
2407 Male, age 75, both hemispheres 35.8
2667 Female, age 75, unknown 35.2
2316 Male, age 76, right hemisphere 34.1
Red nucleus
nTPM: 35.9
2725 Female, age 75, unknown 41.8
2588 Male, age 74, left hemisphere 41.5
2503 Female, age 72, unknown 39.4
1821 Female, age 72, unknown 36.9
2823 Male, age 76, right hemisphere 36.8
2785 Male, age 18, unknown 36.0
1865 Male, age 51, unknown 35.6
2584 Male, age 75, left hemisphere 35.3
2227 Male, age 72, unknown 33.0
1954 Female, age 42, unknown 32.4
2769 Male, age 72, unknown 31.5
1904 Male, age 53, unknown 30.7
Substantia nigra
nTPM: 36.4
1941 Male, age 53, unknown 42.9
2665 Male, age 74, both hemispheres 41.6
1889 Female, age 72, unknown 39.1
2699 Male, age 18, unknown 37.4
1916 Female, age 42, unknown 37.0
2241 Male, age 72, unknown 35.9
2590 Female, age 75, unknown 34.7
1851 Male, age 51, unknown 34.1
2583 Male, age 75, right hemisphere 32.5
2409 Female, age 72, unknown 29.1
Superior colliculus
nTPM: 37.7
1895 Male, age 76, right hemisphere 44.4
2261 Male, age 18, unknown 40.7
2587 Male, age 74, left hemisphere 39.5
2087 Female, age 72, unknown 38.5
1839 Male, age 51, unknown 36.6
1995 Male, age 72, unknown 35.9
2668 Female, age 75, unknown 35.9
1796 Male, age 53, unknown 35.3
2664 Male, age 75, both hemispheres 35.2
1913 Female, age 42, unknown 34.8
Ventral tegmental area
nTPM: 33.7
2218 Male, age 76, both hemispheres 37.3
1942 Male, age 51, unknown 35.6
2410 Female, age 72, unknown 33.8
1915 Female, age 42, unknown 32.3
2223 Female, age 72, unknown 31.7
2021 Male, age 53, unknown 31.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.2
Samples: 139

Max nTPM: 20.1
Min nTPM: 1.4
Std nTPM: 3.0
Median nTPM: 8.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 20.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 17.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 16.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 16.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 15.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 15.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 15.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 14.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 14.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

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