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TRIM16
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  • TRIM16
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TRIM16
Synonyms EBBP
Gene descriptioni

Full gene name according to HGNC.

Tripartite motif containing 16
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband p12
Chromosome location (bp) 15627960 - 15684311
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000221926 (version 109)
Entrez gene 10626
HGNC HGNC:17241
UniProt O95361 (UniProt - Evidence at protein level)
neXtProt NX_O95361
GeneCards TRIM16
Antibodypedia TRIM16 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

E3 ubiquitin ligase that plays an essential role in the organization of autophagic response and ubiquitination upon lysosomal and phagosomal damages. Plays a role in the stress-induced biogenesis and degradation of protein aggresomes by regulating the p62-KEAP1-NRF2 signaling and particularly by modulating the ubiquitination levels and thus stability of NRF2. Acts as a scaffold protein and facilitates autophagic degradation of protein aggregates by interacting with p62/SQSTM, ATG16L1 and LC3B/MAP1LC3B. In turn, protects the cell against oxidative stress-induced cell death as a consequence of endomembrane damage.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ubl conjugation pathway
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a tripartite motif (TRIM) family member that contains two B box domains and a coiled-coiled region that are characteristic of the B box zinc finger protein family. While it lacks a RING domain found in other TRIM proteins, the encoded protein can homodimerize or heterodimerize with other TRIM proteins and has E3 ubiquitin ligase activity. This gene is also a tumor suppressor and is involved in secretory autophagy. [provided by RefSeq, Jan 2017]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TRIM16-201
ENSP00000338989
ENST00000336708
O95361
[Direct mapping] Tripartite motif-containing protein 16
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016605 [PML body]
GO:0016740 [transferase activity]
GO:0019966 [interleukin-1 binding]
GO:0032089 [NACHT domain binding]
GO:0032526 [response to retinoic acid]
GO:0032731 [positive regulation of interleukin-1 beta production]
GO:0043966 [histone H3 acetylation]
GO:0043967 [histone H4 acetylation]
GO:0045618 [positive regulation of keratinocyte differentiation]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0046683 [response to organophosphorus]
GO:0046872 [metal ion binding]
GO:0048386 [positive regulation of retinoic acid receptor signaling pathway]
GO:0060416 [response to growth hormone]
Show all
564 aa
64 kDa
No 0
TRIM16-202
ENSP00000399918
ENST00000416464
B3KP96
[Direct mapping] Tripartite motif-containing protein 16; cDNA FLJ31464 fis, clone NT2NE2001337, highly similar to Tripartite motif-containing protein 16
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0005515 [protein binding]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
Show all
434 aa
50 kDa
No 0
TRIM16-209
ENSP00000463293
ENST00000577372
J3QKY5
[Direct mapping] Tripartite motif-containing protein 16
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
115 aa
13.2 kDa
No 0
TRIM16-210
ENSP00000467031
ENST00000577446
K7ENN8
[Direct mapping] Tripartite motif-containing protein 16
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
Show all
232 aa
27.5 kDa
No 0
TRIM16-211
ENSP00000462903
ENST00000577886
O95361
[Direct mapping] Tripartite motif-containing protein 16
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016605 [PML body]
GO:0016740 [transferase activity]
GO:0019966 [interleukin-1 binding]
GO:0032089 [NACHT domain binding]
GO:0032526 [response to retinoic acid]
GO:0032731 [positive regulation of interleukin-1 beta production]
GO:0043966 [histone H3 acetylation]
GO:0043967 [histone H4 acetylation]
GO:0045618 [positive regulation of keratinocyte differentiation]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0046683 [response to organophosphorus]
GO:0046872 [metal ion binding]
GO:0048386 [positive regulation of retinoic acid receptor signaling pathway]
GO:0060416 [response to growth hormone]
Show all
348 aa
40.4 kDa
No 0
TRIM16-212
ENSP00000463188
ENST00000578237
O95361
[Direct mapping] Tripartite motif-containing protein 16
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016605 [PML body]
GO:0016740 [transferase activity]
GO:0019966 [interleukin-1 binding]
GO:0032089 [NACHT domain binding]
GO:0032526 [response to retinoic acid]
GO:0032731 [positive regulation of interleukin-1 beta production]
GO:0043966 [histone H3 acetylation]
GO:0043967 [histone H4 acetylation]
GO:0045618 [positive regulation of keratinocyte differentiation]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0046683 [response to organophosphorus]
GO:0046872 [metal ion binding]
GO:0048386 [positive regulation of retinoic acid receptor signaling pathway]
GO:0060416 [response to growth hormone]
Show all
564 aa
64 kDa
No 0
TRIM16-213
ENSP00000465907
ENST00000578744
K7EL43
[Direct mapping] Tripartite motif-containing protein 16
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
184 aa
20.6 kDa
No 0
TRIM16-214
ENSP00000463639
ENST00000579219
J3QLP0
[Direct mapping] Tripartite motif-containing protein 16
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
140 aa
15.4 kDa
No 0
TRIM16-219
ENSP00000464072
ENST00000580110
J3QR69
[Direct mapping] Tripartite motif-containing protein 16
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
111 aa
12.4 kDa
No 0
TRIM16-221
ENSP00000463360
ENST00000581200
J3QL38
[Direct mapping] Tripartite motif-containing protein 16
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
96 aa
10.7 kDa
No 0
TRIM16-226
ENSP00000497185
ENST00000649191
O95361
[Direct mapping] Tripartite motif-containing protein 16
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016605 [PML body]
GO:0016740 [transferase activity]
GO:0019966 [interleukin-1 binding]
GO:0032089 [NACHT domain binding]
GO:0032526 [response to retinoic acid]
GO:0032731 [positive regulation of interleukin-1 beta production]
GO:0043966 [histone H3 acetylation]
GO:0043967 [histone H4 acetylation]
GO:0045618 [positive regulation of keratinocyte differentiation]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0046683 [response to organophosphorus]
GO:0046872 [metal ion binding]
GO:0048386 [positive regulation of retinoic acid receptor signaling pathway]
GO:0060416 [response to growth hormone]
Show all
564 aa
64 kDa
No 0

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