MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:156.7 nTPM
HPA Brain:77.0 nTPM
GTEx:156.7 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:84.0 nTPM
Mouse:92.4 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.0
2586 Male, age 75, left hemisphere 114.7
2666 Male, age 74, left hemisphere 92.0
2828 Female, age 72, unknown 85.1
1827 Male, age 72, unknown 84.0
2411 Female, age 72, unknown 73.2
1830 Male, age 51, unknown 67.6
1833 Male, age 53, unknown 64.4
2019 Male, age 18, unknown 64.3
1870 Female, age 42, unknown 63.6
2219 Male, age 76, both hemispheres 60.8
Dorsal raphe nucleus
nTPM: 65.7
2047 Male, age 72, unknown 68.7
2750 Male, age 76, both hemispheres 68.0
1828 Male, age 53, unknown 66.2
2016 Female, age 72, unknown 64.6
2298 Female, age 72, unknown 61.1
Inferior colliculus
nTPM: 58.5
2849 Male, age 72, unknown 63.7
1848 Female, age 42, unknown 59.3
1890 Male, age 53, unknown 57.2
2097 Female, age 72, unknown 54.0
Median raphe nucleus
nTPM: 65.2
2220 Male, age 76, midline 65.2
Periaquaductal grey, anterior
nTPM: 72.8
1795 Male, age 51, unknown 76.6
1947 Male, age 18, unknown 72.4
2502 Female, age 75, unknown 69.4
Periaquaductal grey, dorsal
nTPM: 59.3
1840 Male, age 53, unknown 60.9
2464 Female, age 72, unknown 60.8
1831 Male, age 72, unknown 60.0
2850 Male, age 76, both hemispheres 55.3
Periaquaductal grey, lateral
nTPM: 54.9
2053 Male, age 18, unknown 61.7
2272 Male, age 74, both hemispheres 52.7
2140 Male, age 76, both hemispheres 50.3
Pretectal area
nTPM: 65.7
2007 Male, age 72, unknown 78.7
1817 Female, age 42, unknown 73.6
1815 Male, age 53, unknown 72.7
2825 Male, age 18, unknown 72.7
1816 Male, age 51, unknown 69.9
2407 Male, age 75, both hemispheres 69.5
2667 Female, age 75, unknown 63.2
1944 Female, age 72, unknown 63.1
2224 Female, age 72, unknown 56.8
2316 Male, age 76, right hemisphere 53.6
2273 Male, age 74, both hemispheres 48.4
Red nucleus
nTPM: 68.8
2584 Male, age 75, left hemisphere 90.0
2769 Male, age 72, unknown 72.1
2588 Male, age 74, left hemisphere 70.7
2227 Male, age 72, unknown 69.1
2785 Male, age 18, unknown 68.9
1821 Female, age 72, unknown 67.8
2725 Female, age 75, unknown 67.2
1865 Male, age 51, unknown 65.4
1954 Female, age 42, unknown 65.0
2823 Male, age 76, right hemisphere 63.6
1904 Male, age 53, unknown 63.2
2503 Female, age 72, unknown 62.6
Substantia nigra
nTPM: 73.5
1916 Female, age 42, unknown 93.0
2583 Male, age 75, right hemisphere 89.3
2665 Male, age 74, both hemispheres 89.3
1941 Male, age 53, unknown 78.0
1851 Male, age 51, unknown 76.2
2699 Male, age 18, unknown 71.5
1889 Female, age 72, unknown 65.7
2590 Female, age 75, unknown 65.0
2409 Female, age 72, unknown 56.5
2241 Male, age 72, unknown 50.6
Superior colliculus
nTPM: 68.3
2664 Male, age 75, both hemispheres 91.5
2668 Female, age 75, unknown 82.3
1796 Male, age 53, unknown 75.5
1839 Male, age 51, unknown 66.5
2587 Male, age 74, left hemisphere 64.6
2087 Female, age 72, unknown 63.4
2261 Male, age 18, unknown 63.3
1913 Female, age 42, unknown 62.8
1995 Male, age 72, unknown 58.2
1895 Male, age 76, right hemisphere 54.8
Ventral tegmental area
nTPM: 70.8
2218 Male, age 76, both hemispheres 76.7
1915 Female, age 42, unknown 75.3
2410 Female, age 72, unknown 70.5
1942 Male, age 51, unknown 70.2
2223 Female, age 72, unknown 66.6
2021 Male, age 53, unknown 65.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 156.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.7
Samples: 139

Max nTPM: 356.9
Min nTPM: 68.6
Std nTPM: 39.6
Median nTPM: 151.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 356.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 279.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 269.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 249.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 239.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 227.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 226.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 222.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 220.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 217.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 213.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.2
FF:10158-103A5 76 years, female 45.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.7
Samples: 4

Max nTPM: 101.9
Min nTPM: 68.9
Sample A Female 101.9
Sample B Female 73.3
Sample C Male 70.5
Sample D Male 68.9
Midbrain
nTPM: 84.0
Samples: 4

Max nTPM: 97.2
Min nTPM: 69.3
Sample A Female 97.2
Sample B Female 69.3
Sample C Male 92.4
Sample D Male 77.0
Periaqueductal gray
nTPM: 65.2
Samples: 3

Max nTPM: 68.3
Min nTPM: 62.2
Sample B Female 68.3
Sample C Male 65.2
Sample D Male 62.2
Superior colliculi
nTPM: 75.5
Samples: 4

Max nTPM: 97.7
Min nTPM: 64.4
Sample A Female 97.7
Sample B Female 64.4
Sample C Male 67.4
Sample D Male 72.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.4
Samples: 4

Max nTPM: 104.8
Min nTPM: 83.1
Sample A Male 104.8
Sample B Male 83.5
Sample C Female 83.1
Sample D Female 98.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69528100 Antisense, RP_050421_03_B03, Mouse strain C57BL/6J (56 days, male) 2.1

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