HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:33.7 nTPM
HPA Brain:50.6 nTPM
GTEx:33.7 nTPM
FANTOM5:49.7 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:48.2 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043284
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.6
Sample id Sample description nTPM
Hippocampus
nTPM: 50.6
1898 Male, age 80, left hemisphere 55.2
2529 Female, age 94, left hemisphere 51.2
1911 Female, age 85, right hemisphere 51.0
2621 Female, age 67, right hemisphere 50.6
1855 Male, age 76, left hemisphere 50.4
2148 Female, age 91, left hemisphere 45.5
Dentate gyrus
nTPM: 46.2
2530 Female, age 94, left hemisphere 58.9
2010 Male, age 76, both hemispheres 47.6
2528 Male, age 74, both hemispheres 46.1
2246 Female, age 85, both hemispheres 43.6
1927 Female, age 91, both hemispheres 40.6
2531 Female, age 67, both hemispheres 40.5
Entorhinal gyrus
nTPM: 47.2
2117 Female, age 91, right hemisphere 56.6
2764 Male, age 80, right hemisphere 49.4
2686 Male, age 75, right hemisphere 45.8
2613 Female, age 94, left hemisphere 45.0
1787 Male, age 76, left hemisphere 44.4
1938 Female, age 85, left hemisphere 42.2
Hippocampus, CA1
nTPM: 43.8
1873 Female, age 85, both hemispheres 48.5
2082 Female, age 91, right hemisphere 44.5
2527 Male, age 74, both hemispheres 43.2
2749 Male, age 80, left hemisphere 42.5
2045 Male, age 76, both hemispheres 40.5
Hippocampus, CA2
nTPM: 47.1
1963 Male, age 80, left hemisphere 54.6
2437 Female, age 94, left hemisphere 48.6
2249 Male, age 74, both hemispheres 47.5
1940 Female, age 85, left hemisphere 45.6
1892 Male, age 76, both hemispheres 44.7
2113 Female, age 91, right hemisphere 41.5
Hippocampus, CA3
nTPM: 48.6
2620 Female, age 94, left hemisphere 56.7
2861 Female, age 67, both hemispheres 53.0
2436 Male, age 74, both hemispheres 50.7
1891 Female, age 85, both hemispheres 47.2
1867 Male, age 76, both hemispheres 46.2
2137 Male, age 80, left hemisphere 38.0
Parahippocampal cortex
nTPM: 39.6
2692 Male, age 74, both hemispheres 50.6
2532 Female, age 72, left hemisphere 42.6
1990 Female, age 91, right hemisphere 40.8
2622 Female, age 67, right hemisphere 40.4
2245 Female, age 91, both hemispheres 39.8
1933 Female, age 85, both hemispheres 37.7
2018 Male, age 76, both hemispheres 36.5
1850 Male, age 80, both hemispheres 36.2
2693 Female, age 94, both hemispheres 35.8
2250 Female, age 67, right hemisphere 35.1
Perirhinal gyrus
nTPM: 33.9
1794 Male, age 80, right hemisphere 37.5
1841 Female, age 85, right hemisphere 35.0
2521 Female, age 94, right hemisphere 33.0
1847 Female, age 91, left hemisphere 32.5
2848 Male, age 76, right hemisphere 31.7
Subiculum
nTPM: 49.9
2438 Female, age 94, left hemisphere 54.3
2042 Male, age 76, both hemispheres 54.2
2619 Male, age 74, both hemispheres 52.8
1901 Male, age 80, both hemispheres 50.0
2729 Female, age 91, right hemisphere 45.1
1977 Female, age 85, both hemispheres 42.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.7
Samples: 197

Max nTPM: 68.0
Min nTPM: 11.6
Std nTPM: 8.9
Median nTPM: 33.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 68.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 60.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 59.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 56.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 56.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 53.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 49.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 49.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 49.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 49.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 48.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.7
FF:10153-102I9 76 years, female 50.5
FF:10169-103B7 60 years, female 48.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Subiculum
nTPM: 20.9
Samples: 4

Max nTPM: 21.7
Min nTPM: 18.9
Sample A Female 21.6
Sample B Female 21.4
Sample C Male 21.7
Sample D Male 18.9
Dorsal hippocampus
nTPM: 24.3
Samples: 4

Max nTPM: 26.1
Min nTPM: 20.1
Sample A Female 26.1
Sample B Female 25.8
Sample C Male 25.1
Sample D Male 20.1
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 20.4
Min nTPM: 19.0
Sample A Female 20.4
Sample B Female 19.0
Sample C Male 20.2
Sample D Male 19.9
Ventral hippocampus
nTPM: 24.6
Samples: 4

Max nTPM: 28.9
Min nTPM: 19.6
Sample A Female 24.0
Sample B Female 19.6
Sample C Male 28.9
Sample D Male 25.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.6
Samples: 4

Max nTPM: 52.8
Min nTPM: 38.9
Sample A Male 41.1
Sample B Male 38.9
Sample C Female 45.7
Sample D Female 52.8
Hippocampal formation
nTPM: 48.2
Samples: 4

Max nTPM: 53.5
Min nTPM: 44.3
Sample A Male 46.8
Sample B Male 44.3
Sample C Female 53.5
Sample D Female 48.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
68269749 Antisense, RP_041129_02_B03, Mouse strain C57BL/6J (56 days, male) 0.3

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