MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.2 nTPM
HPA Brain:80.1 nTPM
GTEx:37.2 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:30.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.0
2586 Male, age 75, left hemisphere 95.8
1870 Female, age 42, unknown 78.6
2828 Female, age 72, unknown 75.7
1833 Male, age 53, unknown 75.3
1830 Male, age 51, unknown 74.5
2019 Male, age 18, unknown 72.1
2411 Female, age 72, unknown 71.9
2666 Male, age 74, left hemisphere 66.6
1827 Male, age 72, unknown 58.5
2219 Male, age 76, both hemispheres 51.0
Dorsal raphe nucleus
nTPM: 70.4
2750 Male, age 76, both hemispheres 79.7
2016 Female, age 72, unknown 72.4
1828 Male, age 53, unknown 69.2
2298 Female, age 72, unknown 66.2
2047 Male, age 72, unknown 64.8
Inferior colliculus
nTPM: 55.2
2849 Male, age 72, unknown 62.8
1848 Female, age 42, unknown 56.6
1890 Male, age 53, unknown 55.7
2097 Female, age 72, unknown 45.7
Median raphe nucleus
nTPM: 64.9
2220 Male, age 76, midline 64.9
Periaquaductal grey, anterior
nTPM: 66.9
1795 Male, age 51, unknown 70.1
1947 Male, age 18, unknown 66.4
2502 Female, age 75, unknown 64.1
Periaquaductal grey, dorsal
nTPM: 65.5
2850 Male, age 76, both hemispheres 91.7
1831 Male, age 72, unknown 60.0
1840 Male, age 53, unknown 55.3
2464 Female, age 72, unknown 55.1
Periaquaductal grey, lateral
nTPM: 68.5
2272 Male, age 74, both hemispheres 74.4
2140 Male, age 76, both hemispheres 66.6
2053 Male, age 18, unknown 64.4
Pretectal area
nTPM: 59.2
2407 Male, age 75, both hemispheres 69.4
2825 Male, age 18, unknown 69.2
2273 Male, age 74, both hemispheres 66.1
2667 Female, age 75, unknown 63.8
1815 Male, age 53, unknown 60.9
2007 Male, age 72, unknown 59.0
1817 Female, age 42, unknown 58.6
2316 Male, age 76, right hemisphere 56.8
2224 Female, age 72, unknown 56.1
1944 Female, age 72, unknown 46.5
1816 Male, age 51, unknown 45.1
Red nucleus
nTPM: 80.1
2769 Male, age 72, unknown 90.5
2227 Male, age 72, unknown 89.3
1904 Male, age 53, unknown 89.2
1865 Male, age 51, unknown 87.5
2584 Male, age 75, left hemisphere 82.1
1821 Female, age 72, unknown 80.9
2823 Male, age 76, right hemisphere 80.5
1954 Female, age 42, unknown 78.7
2785 Male, age 18, unknown 75.9
2588 Male, age 74, left hemisphere 71.6
2725 Female, age 75, unknown 68.7
2503 Female, age 72, unknown 67.0
Substantia nigra
nTPM: 60.6
2583 Male, age 75, right hemisphere 75.4
2699 Male, age 18, unknown 68.2
1851 Male, age 51, unknown 67.4
1916 Female, age 42, unknown 62.7
2590 Female, age 75, unknown 61.5
2665 Male, age 74, both hemispheres 57.7
1889 Female, age 72, unknown 57.6
2409 Female, age 72, unknown 55.8
1941 Male, age 53, unknown 55.3
2241 Male, age 72, unknown 44.3
Superior colliculus
nTPM: 65.8
1995 Male, age 72, unknown 84.2
2664 Male, age 75, both hemispheres 77.8
1913 Female, age 42, unknown 76.1
2668 Female, age 75, unknown 70.5
2587 Male, age 74, left hemisphere 66.0
1839 Male, age 51, unknown 64.9
1796 Male, age 53, unknown 64.5
2261 Male, age 18, unknown 53.6
1895 Male, age 76, right hemisphere 52.4
2087 Female, age 72, unknown 48.0
Ventral tegmental area
nTPM: 68.0
2223 Female, age 72, unknown 86.7
2021 Male, age 53, unknown 69.4
1942 Male, age 51, unknown 64.7
1915 Female, age 42, unknown 63.7
2410 Female, age 72, unknown 62.5
2218 Male, age 76, both hemispheres 60.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.2
Samples: 139

Max nTPM: 77.4
Min nTPM: 17.0
Std nTPM: 9.6
Median nTPM: 36.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 77.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 64.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 63.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 61.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 55.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 55.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 53.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 52.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 52.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 52.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.0
FF:10158-103A5 76 years, female 72.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.3
Samples: 4

Max nTPM: 35.3
Min nTPM: 23.6
Sample A Female 28.4
Sample B Female 23.6
Sample C Male 29.7
Sample D Male 35.3
Midbrain
nTPM: 30.2
Samples: 4

Max nTPM: 48.2
Min nTPM: 22.1
Sample A Female 48.2
Sample B Female 27.3
Sample C Male 23.3
Sample D Male 22.1
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 26.5
Min nTPM: 24.3
Sample B Female 26.5
Sample C Male 26.1
Sample D Male 24.3
Superior colliculi
nTPM: 25.2
Samples: 4

Max nTPM: 26.1
Min nTPM: 23.6
Sample A Female 25.9
Sample B Female 23.6
Sample C Male 25.0
Sample D Male 26.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 34.0
Min nTPM: 28.2
Sample A Male 34.0
Sample B Male 28.2
Sample C Female 29.2
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68269749 Antisense, RP_041129_02_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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