MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA Brain:26.0 nTPM
GTEx:23.0 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:0.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
1830 Male, age 51, unknown 25.6
2019 Male, age 18, unknown 25.3
1833 Male, age 53, unknown 24.2
2828 Female, age 72, unknown 23.7
2411 Female, age 72, unknown 23.6
1827 Male, age 72, unknown 23.3
2666 Male, age 74, left hemisphere 23.1
1870 Female, age 42, unknown 22.6
2219 Male, age 76, both hemispheres 21.2
2586 Male, age 75, left hemisphere 19.0
Dorsal raphe nucleus
nTPM: 20.8
2750 Male, age 76, both hemispheres 24.4
1828 Male, age 53, unknown 21.1
2047 Male, age 72, unknown 20.4
2016 Female, age 72, unknown 19.8
2298 Female, age 72, unknown 18.4
Inferior colliculus
nTPM: 21.9
2849 Male, age 72, unknown 23.7
1848 Female, age 42, unknown 21.6
1890 Male, age 53, unknown 21.5
2097 Female, age 72, unknown 20.7
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Periaquaductal grey, anterior
nTPM: 20.8
2502 Female, age 75, unknown 23.7
1947 Male, age 18, unknown 19.8
1795 Male, age 51, unknown 18.9
Periaquaductal grey, dorsal
nTPM: 20.2
2464 Female, age 72, unknown 22.8
1831 Male, age 72, unknown 21.2
1840 Male, age 53, unknown 18.8
2850 Male, age 76, both hemispheres 17.9
Periaquaductal grey, lateral
nTPM: 22.6
2053 Male, age 18, unknown 23.4
2140 Male, age 76, both hemispheres 22.4
2272 Male, age 74, both hemispheres 22.1
Pretectal area
nTPM: 23.4
2667 Female, age 75, unknown 27.8
2407 Male, age 75, both hemispheres 24.8
1816 Male, age 51, unknown 24.2
2316 Male, age 76, right hemisphere 24.2
1815 Male, age 53, unknown 24.0
2007 Male, age 72, unknown 24.0
1817 Female, age 42, unknown 23.5
2273 Male, age 74, both hemispheres 22.9
2825 Male, age 18, unknown 21.4
1944 Female, age 72, unknown 21.1
2224 Female, age 72, unknown 19.7
Red nucleus
nTPM: 26.0
2823 Male, age 76, right hemisphere 30.6
2588 Male, age 74, left hemisphere 30.1
2584 Male, age 75, left hemisphere 27.6
2785 Male, age 18, unknown 27.5
1865 Male, age 51, unknown 25.9
1821 Female, age 72, unknown 25.3
2769 Male, age 72, unknown 25.0
1904 Male, age 53, unknown 24.7
2227 Male, age 72, unknown 24.7
2725 Female, age 75, unknown 24.6
2503 Female, age 72, unknown 23.7
1954 Female, age 42, unknown 22.7
Substantia nigra
nTPM: 22.8
2409 Female, age 72, unknown 28.1
1941 Male, age 53, unknown 25.0
1889 Female, age 72, unknown 23.3
2583 Male, age 75, right hemisphere 22.4
2699 Male, age 18, unknown 22.4
2590 Female, age 75, unknown 22.2
1916 Female, age 42, unknown 22.0
1851 Male, age 51, unknown 21.7
2241 Male, age 72, unknown 21.5
2665 Male, age 74, both hemispheres 19.6
Superior colliculus
nTPM: 22.5
1895 Male, age 76, right hemisphere 26.7
1913 Female, age 42, unknown 25.7
1839 Male, age 51, unknown 23.5
2664 Male, age 75, both hemispheres 22.8
1995 Male, age 72, unknown 22.1
2587 Male, age 74, left hemisphere 21.9
1796 Male, age 53, unknown 21.7
2087 Female, age 72, unknown 21.7
2261 Male, age 18, unknown 21.6
2668 Female, age 75, unknown 17.7
Ventral tegmental area
nTPM: 20.2
2218 Male, age 76, both hemispheres 20.8
2223 Female, age 72, unknown 20.8
2410 Female, age 72, unknown 20.8
1915 Female, age 42, unknown 20.0
2021 Male, age 53, unknown 19.7
1942 Male, age 51, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.0
Samples: 139

Max nTPM: 41.7
Min nTPM: 10.0
Std nTPM: 6.5
Median nTPM: 21.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 41.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 41.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 36.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 36.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 36.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 35.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 34.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 33.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.2
FF:10158-103A5 76 years, female 58.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 13.1
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 10.9
Sample C Male 10.2
Sample D Male 13.1
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 12.0
Sample C Male 10.7
Sample D Male 11.8
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 11.9
Min nTPM: 9.5
Sample B Female 11.9
Sample C Male 9.5
Sample D Male 9.8
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 9.0
Sample C Male 11.0
Sample D Male 10.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.1
Sample D Female 0.1

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