HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:21.0 nTPM
HPA Brain:40.0 nTPM
GTEx:21.0 nTPM
FANTOM5:26.0 Scaled Tags Per Million
Pig:24.4 nTPM
Mouse:35.8 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA066070
Glial cells High
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.0
Sample id Sample description nTPM
Hippocampus
nTPM: 40.0
2621 Female, age 67, right hemisphere 44.8
1898 Male, age 80, left hemisphere 43.8
2148 Female, age 91, left hemisphere 41.8
1855 Male, age 76, left hemisphere 37.2
2529 Female, age 94, left hemisphere 37.0
1911 Female, age 85, right hemisphere 35.1
Dentate gyrus
nTPM: 39.6
2531 Female, age 67, both hemispheres 46.3
2530 Female, age 94, left hemisphere 45.2
2010 Male, age 76, both hemispheres 40.1
1927 Female, age 91, both hemispheres 39.0
2528 Male, age 74, both hemispheres 34.6
2246 Female, age 85, both hemispheres 32.8
Entorhinal gyrus
nTPM: 33.6
2613 Female, age 94, left hemisphere 38.1
2764 Male, age 80, right hemisphere 37.6
1787 Male, age 76, left hemisphere 35.3
2686 Male, age 75, right hemisphere 30.9
2117 Female, age 91, right hemisphere 30.2
1938 Female, age 85, left hemisphere 29.5
Hippocampus, CA1
nTPM: 35.5
2749 Male, age 80, left hemisphere 46.0
2527 Male, age 74, both hemispheres 38.0
1873 Female, age 85, both hemispheres 34.2
2045 Male, age 76, both hemispheres 31.1
2082 Female, age 91, right hemisphere 28.2
Hippocampus, CA2
nTPM: 36.8
1963 Male, age 80, left hemisphere 48.3
2437 Female, age 94, left hemisphere 37.8
1892 Male, age 76, both hemispheres 36.9
1940 Female, age 85, left hemisphere 33.9
2249 Male, age 74, both hemispheres 32.7
2113 Female, age 91, right hemisphere 31.3
Hippocampus, CA3
nTPM: 38.8
2861 Female, age 67, both hemispheres 62.1
2620 Female, age 94, left hemisphere 46.1
2137 Male, age 80, left hemisphere 37.7
1867 Male, age 76, both hemispheres 32.0
1891 Female, age 85, both hemispheres 28.1
2436 Male, age 74, both hemispheres 27.0
Parahippocampal cortex
nTPM: 33.3
2622 Female, age 67, right hemisphere 43.0
2245 Female, age 91, both hemispheres 41.2
2532 Female, age 72, left hemisphere 36.9
1990 Female, age 91, right hemisphere 32.6
1933 Female, age 85, both hemispheres 31.9
2250 Female, age 67, right hemisphere 31.4
2692 Male, age 74, both hemispheres 30.7
2018 Male, age 76, both hemispheres 30.2
1850 Male, age 80, both hemispheres 28.6
2693 Female, age 94, both hemispheres 26.9
Perirhinal gyrus
nTPM: 33.4
1794 Male, age 80, right hemisphere 37.2
2521 Female, age 94, right hemisphere 34.3
1847 Female, age 91, left hemisphere 33.6
2848 Male, age 76, right hemisphere 31.5
1841 Female, age 85, right hemisphere 30.2
Subiculum
nTPM: 31.1
2619 Male, age 74, both hemispheres 34.3
1977 Female, age 85, both hemispheres 33.5
2729 Female, age 91, right hemisphere 33.3
1901 Male, age 80, both hemispheres 30.0
2438 Female, age 94, left hemisphere 27.9
2042 Male, age 76, both hemispheres 27.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.0
Samples: 197

Max nTPM: 43.6
Min nTPM: 6.6
Std nTPM: 7.6
Median nTPM: 20.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 43.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 43.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 38.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 38.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 37.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 37.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 37.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 34.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 34.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 34.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 34.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.0
FF:10169-103B7 60 years, female 28.0
FF:10153-102I9 76 years, female 24.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.4
Pig sample Sample description nTPM
Subiculum
nTPM: 20.7
Samples: 4

Max nTPM: 30.6
Min nTPM: 13.5
Sample A Female 30.6
Sample B Female 19.6
Sample C Male 19.2
Sample D Male 13.5
Dorsal hippocampus
nTPM: 24.4
Samples: 4

Max nTPM: 33.8
Min nTPM: 17.4
Sample A Female 33.8
Sample B Female 28.4
Sample C Male 17.4
Sample D Male 17.9
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 30.6
Min nTPM: 13.6
Sample A Female 16.9
Sample B Female 24.4
Sample C Male 30.6
Sample D Male 13.6
Ventral hippocampus
nTPM: 23.0
Samples: 4

Max nTPM: 28.6
Min nTPM: 19.4
Sample A Female 22.2
Sample B Female 19.4
Sample C Male 28.6
Sample D Male 21.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 35.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 38.4
Min nTPM: 34.1
Sample A Male 38.4
Sample B Male 34.1
Sample C Female 34.8
Sample D Female 35.8
Hippocampal formation
nTPM: 35.6
Samples: 4

Max nTPM: 39.0
Min nTPM: 33.7
Sample A Male 33.7
Sample B Male 34.9
Sample C Female 39.0
Sample D Female 34.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
70596035 Antisense, RP_050628_03_H08, Mouse strain C57BL/6J (56 days, male) 0.4

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