BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:26.7 nTPM
HPA Brain:54.0 nTPM
GTEx:26.7 nTPM
FANTOM5:88.5 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:14.6 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA006628
Glial cells High
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.4
2289 Male, age 61, right hemisphere 58.3
1854 Male, age 80, left hemisphere 56.1
1781 Male, age 74, unknown 55.5
2290 Female, age 72, unknown 50.1
2846 Female, age 79, unknown 48.2
2288 Male, age 75, left hemisphere 47.6
1857 Female, age 85, left hemisphere 45.7
2481 Female, age 94, left hemisphere 41.6
Globus pallidus, externus
nTPM: 53.6
2646 Male, age 61, right hemisphere 59.1
2395 Male, age 75, both hemispheres 57.2
2567 Female, age 72, unknown 54.7
2772 Female, age 79, unknown 51.1
1996 Male, age 80, right hemisphere 46.1
Globus pallidus, internus
nTPM: 51.7
2566 Female, age 72, unknown 59.3
2111 Female, age 85, right hemisphere 58.2
2778 Female, age 91, both hemispheres 53.1
1818 Male, age 74, unknown 52.7
2037 Male, age 80, right hemisphere 51.3
2287 Male, age 75, right hemisphere 45.7
2483 Female, age 94, right hemisphere 41.5
Nucleus accumbens
nTPM: 50.4
2824 Male, age 61, right hemisphere 58.8
2732 Male, age 80, right hemisphere 52.4
2391 Female, age 94, left hemisphere 50.3
1806 Female, age 85, left hemisphere 50.1
1783 Male, age 74, unknown 48.8
2286 Male, age 75, left hemisphere 48.2
1856 Female, age 91, right hemisphere 48.1
2698 Female, age 72, unknown 46.6
Nucleus basalis of Meynert
nTPM: 52.4
2569 Male, age 61, both hemispheres 54.5
2821 Male, age 75, both hemispheres 52.1
2393 Male, age 80, right hemisphere 51.8
2484 Female, age 94, left hemisphere 51.3
Nucleus of the diagonal band
nTPM: 49.6
2029 Male, age 61, right hemisphere 56.9
1979 Male, age 74, unknown 52.6
2195 Female, age 85, both hemispheres 47.5
1812 Female, age 91, both hemispheres 46.3
2775 Male, age 80, right hemisphere 45.0
Putamen
nTPM: 52.8
1838 Male, age 80, right hemisphere 56.6
2466 Female, age 79, unknown 55.8
1829 Male, age 74, unknown 55.6
2489 Female, age 72, unknown 53.6
1937 Female, age 91, right hemisphere 53.5
2647 Male, age 75, left hemisphere 52.3
2482 Female, age 94, left hemisphere 42.6
Septal nuclei
nTPM: 51.0
2059 Female, age 85, both hemispheres 56.7
2009 Female, age 91, both hemispheres 53.0
2031 Female, age 72, unknown 51.4
2394 Male, age 61, left hemisphere 51.0
1960 Male, age 74, unknown 50.3
2199 Male, age 80, right hemisphere 48.4
2629 Female, age 94, right hemisphere 46.1
Stria terminalis, bed nucleus
nTPM: 54.0
2486 Female, age 94, both hemispheres 56.7
2201 Male, age 74, unknown 53.7
1974 Female, age 91, both hemispheres 51.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.1
Samples: 246

Max nTPM: 69.3
Min nTPM: 9.8
Std nTPM: 7.6
Median nTPM: 24.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 69.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 55.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 52.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 44.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 43.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 41.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 41.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 41.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 41.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 40.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 40.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 83.0
Min nTPM: 10.9
Std nTPM: 9.7
Median nTPM: 24.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 83.0
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 64.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 62.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 60.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 57.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 57.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 53.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 52.5
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 49.7
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 49.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 48.5
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Brain - Putamen (basal ganglia)
Average nTPM: 24.5
Samples: 205

Max nTPM: 53.4
Min nTPM: 11.0
Std nTPM: 6.7
Median nTPM: 23.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 53.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 47.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 45.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 43.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 40.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 40.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 40.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 38.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 37.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 37.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 36.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 88.5
FF:10164-103B2 76 years, female 88.5
Nucleus accumbens
Scaled Tags Per Million: 78.5
FF:10037-101F1 23-56 years, mixed 78.5
Putamen
Scaled Tags Per Million: 65.6
FF:10176-103C5 60 years, female 65.6
Globus pallidus
Scaled Tags Per Million: 68.2
FF:10161-103A8 76 years, female 86.3
FF:10175-103C4 60 years, female 50.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Caudate
nTPM: 13.6
Samples: 4

Max nTPM: 14.5
Min nTPM: 12.7
Sample A Female 13.3
Sample B Female 14.5
Sample C Male 12.7
Sample D Male 13.8
Putamen
nTPM: 13.3
Samples: 4

Max nTPM: 15.3
Min nTPM: 10.3
Sample A Female 15.3
Sample B Female 13.0
Sample C Male 10.3
Sample D Male 14.7
Septum
nTPM: 14.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.7
Sample A Female 14.1
Sample B Female 14.4
Sample C Male 12.7
Sample D Male 15.5
Ventral pallidum
nTPM: 14.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 14.3
Sample C Male 13.6
Sample D Male 15.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.1
Samples: 4

Max nTPM: 15.1
Min nTPM: 12.9
Sample A Male 13.7
Sample B Male 15.1
Sample C Female 12.9
Sample D Female 14.6
Septum
nTPM: 14.4
Samples: 4

Max nTPM: 14.8
Min nTPM: 13.8
Sample A Male 13.8
Sample B Male 14.3
Sample C Female 14.8
Sample D Female 14.5
Ventral forebrain
nTPM: 14.7
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.8
Sample A Male 12.8
Sample B Male 14.1
Sample C Female 17.3
Sample D Female 14.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
100146062 Antisense, RP_110421_02_F11, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.1
100146062 Antisense, RP_110421_02_F11, Mouse strain C57BL/6J (56 days, male) 1.1

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