MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.7 nTPM
HPA Brain:22.8 nTPM
GTEx:22.7 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:179.3 nTPM
Mouse:31.9 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.6
1870 Female, age 42, unknown 22.1
2586 Male, age 75, left hemisphere 21.6
1830 Male, age 51, unknown 21.5
2219 Male, age 76, both hemispheres 21.5
1833 Male, age 53, unknown 21.2
2019 Male, age 18, unknown 20.5
2411 Female, age 72, unknown 19.9
2828 Female, age 72, unknown 19.6
2666 Male, age 74, left hemisphere 19.4
1827 Male, age 72, unknown 18.5
Dorsal raphe nucleus
nTPM: 22.2
2016 Female, age 72, unknown 24.9
2047 Male, age 72, unknown 23.0
1828 Male, age 53, unknown 22.1
2750 Male, age 76, both hemispheres 21.5
2298 Female, age 72, unknown 19.6
Inferior colliculus
nTPM: 21.2
1890 Male, age 53, unknown 22.4
2097 Female, age 72, unknown 21.9
1848 Female, age 42, unknown 20.9
2849 Male, age 72, unknown 19.6
Median raphe nucleus
nTPM: 20.5
2220 Male, age 76, midline 20.5
Periaquaductal grey, anterior
nTPM: 19.4
2502 Female, age 75, unknown 23.0
1947 Male, age 18, unknown 19.1
1795 Male, age 51, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 22.7
2850 Male, age 76, both hemispheres 26.1
1840 Male, age 53, unknown 22.2
1831 Male, age 72, unknown 21.6
2464 Female, age 72, unknown 21.0
Periaquaductal grey, lateral
nTPM: 20.8
2140 Male, age 76, both hemispheres 21.8
2053 Male, age 18, unknown 20.6
2272 Male, age 74, both hemispheres 20.0
Pretectal area
nTPM: 19.7
2273 Male, age 74, both hemispheres 21.5
1815 Male, age 53, unknown 21.3
2407 Male, age 75, both hemispheres 21.1
2667 Female, age 75, unknown 20.5
1944 Female, age 72, unknown 20.1
2224 Female, age 72, unknown 20.0
2316 Male, age 76, right hemisphere 19.6
1817 Female, age 42, unknown 19.3
2007 Male, age 72, unknown 18.0
1816 Male, age 51, unknown 17.9
2825 Male, age 18, unknown 17.7
Red nucleus
nTPM: 20.4
1821 Female, age 72, unknown 23.8
1904 Male, age 53, unknown 22.9
1865 Male, age 51, unknown 22.6
1954 Female, age 42, unknown 22.2
2823 Male, age 76, right hemisphere 21.5
2503 Female, age 72, unknown 20.5
2769 Male, age 72, unknown 20.1
2227 Male, age 72, unknown 19.4
2584 Male, age 75, left hemisphere 18.6
2725 Female, age 75, unknown 18.3
2785 Male, age 18, unknown 18.3
2588 Male, age 74, left hemisphere 17.1
Substantia nigra
nTPM: 22.8
2699 Male, age 18, unknown 33.1
2241 Male, age 72, unknown 27.8
1851 Male, age 51, unknown 24.3
2409 Female, age 72, unknown 23.5
1916 Female, age 42, unknown 22.1
1889 Female, age 72, unknown 20.6
1941 Male, age 53, unknown 20.0
2583 Male, age 75, right hemisphere 19.2
2665 Male, age 74, both hemispheres 18.8
2590 Female, age 75, unknown 18.5
Superior colliculus
nTPM: 20.5
2664 Male, age 75, both hemispheres 23.6
1995 Male, age 72, unknown 23.1
2668 Female, age 75, unknown 22.2
1913 Female, age 42, unknown 21.8
1839 Male, age 51, unknown 20.5
2587 Male, age 74, left hemisphere 20.2
2087 Female, age 72, unknown 19.9
1895 Male, age 76, right hemisphere 19.1
1796 Male, age 53, unknown 17.6
2261 Male, age 18, unknown 17.4
Ventral tegmental area
nTPM: 22.0
1915 Female, age 42, unknown 23.3
1942 Male, age 51, unknown 22.7
2223 Female, age 72, unknown 22.3
2021 Male, age 53, unknown 21.9
2218 Male, age 76, both hemispheres 21.7
2410 Female, age 72, unknown 19.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.7
Samples: 139

Max nTPM: 95.0
Min nTPM: 11.8
Std nTPM: 9.2
Median nTPM: 20.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 95.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 51.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 51.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 43.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 41.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 40.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 39.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 37.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 35.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 34.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 33.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 179.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 179.3
Samples: 4

Max nTPM: 220.5
Min nTPM: 154.8
Sample A Female 220.5
Sample B Female 177.2
Sample C Male 164.6
Sample D Male 154.8
Midbrain
nTPM: 169.3
Samples: 4

Max nTPM: 266.4
Min nTPM: 114.0
Sample A Female 266.4
Sample B Female 167.3
Sample C Male 114.0
Sample D Male 129.4
Periaqueductal gray
nTPM: 161.9
Samples: 3

Max nTPM: 174.6
Min nTPM: 155.3
Sample B Female 155.3
Sample C Male 174.6
Sample D Male 155.9
Superior colliculi
nTPM: 172.4
Samples: 4

Max nTPM: 209.9
Min nTPM: 146.4
Sample A Female 209.9
Sample B Female 175.6
Sample C Male 157.8
Sample D Male 146.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 37.0
Min nTPM: 27.8
Sample A Male 37.0
Sample B Male 31.8
Sample C Female 27.8
Sample D Female 31.0

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