BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:201.5 nTPM
HPA Brain:111.7 nTPM
GTEx:201.5 nTPM
FANTOM5:168.3 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA060789
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 111.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 100.6
1857 Female, age 85, left hemisphere 149.0
2846 Female, age 79, unknown 135.8
2290 Female, age 72, unknown 129.4
1854 Male, age 80, left hemisphere 107.7
1781 Male, age 74, unknown 99.4
2289 Male, age 61, right hemisphere 67.2
2288 Male, age 75, left hemisphere 66.0
2481 Female, age 94, left hemisphere 49.9
Globus pallidus, externus
nTPM: 20.3
2646 Male, age 61, right hemisphere 24.9
2395 Male, age 75, both hemispheres 24.7
2772 Female, age 79, unknown 22.7
1996 Male, age 80, right hemisphere 16.5
2567 Female, age 72, unknown 12.8
Globus pallidus, internus
nTPM: 17.1
2483 Female, age 94, right hemisphere 43.7
2566 Female, age 72, unknown 15.7
2287 Male, age 75, right hemisphere 14.7
2037 Male, age 80, right hemisphere 13.5
1818 Male, age 74, unknown 12.6
2778 Female, age 91, both hemispheres 11.6
2111 Female, age 85, right hemisphere 8.2
Nucleus accumbens
nTPM: 107.7
1856 Female, age 91, right hemisphere 191.6
1783 Male, age 74, unknown 164.2
1806 Female, age 85, left hemisphere 163.4
2824 Male, age 61, right hemisphere 97.9
2698 Female, age 72, unknown 91.3
2286 Male, age 75, left hemisphere 77.8
2732 Male, age 80, right hemisphere 43.3
2391 Female, age 94, left hemisphere 31.9
Nucleus basalis of Meynert
nTPM: 61.7
2484 Female, age 94, left hemisphere 89.2
2393 Male, age 80, right hemisphere 84.5
2821 Male, age 75, both hemispheres 44.0
2569 Male, age 61, both hemispheres 29.1
Nucleus of the diagonal band
nTPM: 60.9
1812 Female, age 91, both hemispheres 88.7
2775 Male, age 80, right hemisphere 71.2
2195 Female, age 85, both hemispheres 56.2
1979 Male, age 74, unknown 44.5
2029 Male, age 61, right hemisphere 44.1
Putamen
nTPM: 111.7
2466 Female, age 79, unknown 171.1
1937 Female, age 91, right hemisphere 158.4
1838 Male, age 80, right hemisphere 129.7
1829 Male, age 74, unknown 99.1
2489 Female, age 72, unknown 91.3
2647 Male, age 75, left hemisphere 74.7
2482 Female, age 94, left hemisphere 57.8
Septal nuclei
nTPM: 54.5
1960 Male, age 74, unknown 94.4
2009 Female, age 91, both hemispheres 65.6
2031 Female, age 72, unknown 60.3
2059 Female, age 85, both hemispheres 53.1
2199 Male, age 80, right hemisphere 43.2
2629 Female, age 94, right hemisphere 33.1
2394 Male, age 61, left hemisphere 32.0
Stria terminalis, bed nucleus
nTPM: 48.2
1974 Female, age 91, both hemispheres 55.8
2486 Female, age 94, both hemispheres 53.3
2201 Male, age 74, unknown 35.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 201.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 174.1
Samples: 246

Max nTPM: 483.1
Min nTPM: 3.2
Std nTPM: 88.2
Median nTPM: 169.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 483.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 424.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 421.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 410.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 392.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 387.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 382.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 382.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 371.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 359.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 359.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 201.5
Samples: 246

Max nTPM: 617.9
Min nTPM: 5.6
Std nTPM: 91.3
Median nTPM: 202.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 617.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 413.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 411.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 408.3
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 402.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 401.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 393.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 381.4
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 376.5
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 359.1
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 358.7
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Brain - Putamen (basal ganglia)
Average nTPM: 195.5
Samples: 205

Max nTPM: 463.0
Min nTPM: 26.1
Std nTPM: 93.7
Median nTPM: 189.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 463.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 422.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 420.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 402.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 385.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 384.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 382.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 382.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 366.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 360.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 358.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 112.2
FF:10164-103B2 76 years, female 112.2
Nucleus accumbens
Scaled Tags Per Million: 111.3
FF:10037-101F1 23-56 years, mixed 111.3
Putamen
Scaled Tags Per Million: 168.3
FF:10176-103C5 60 years, female 168.3
Globus pallidus
Scaled Tags Per Million: 25.7
FF:10175-103C4 60 years, female 39.2
FF:10161-103A8 76 years, female 12.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Caudate
nTPM: 15.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 16.7
Sample C Male 19.9
Sample D Male 14.7
Putamen
nTPM: 15.8
Samples: 4

Max nTPM: 25.7
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 14.7
Sample C Male 25.7
Sample D Male 16.6
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 15.3
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.0
Sample C Male 15.3
Sample D Male 9.8
Ventral pallidum
nTPM: 9.5
Samples: 4

Max nTPM: 15.2
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 15.2
Sample C Male 10.7
Sample D Male 6.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.2
Samples: 4

Max nTPM: 3.1
Min nTPM: 0.3
Sample A Male 0.3
Sample B Male 3.1
Sample C Female 0.5
Sample D Female 0.9
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.2
Sample A Male 4.6
Sample B Male 6.9
Sample C Female 5.6
Sample D Female 3.2
Ventral forebrain
nTPM: 2.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 1.5
Sample A Male 4.4
Sample B Male 1.5
Sample C Female 3.2
Sample D Female 1.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70724595 Antisense, RP_050705_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0
74750064 Antisense, RP_060220_05_F06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70724595 Antisense, RP_050705_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0
74750064 Antisense, RP_060220_05_F06, Mouse strain C57BL/6J (56 days, male) 0.0

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