MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.5 nTPM
HPA Brain:1.5 nTPM
GTEx:0.5 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:0.9 nTPM
Mouse:0.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.3
2219 Male, age 76, both hemispheres 1.6
2828 Female, age 72, unknown 1.5
2019 Male, age 18, unknown 1.4
2586 Male, age 75, left hemisphere 1.4
1827 Male, age 72, unknown 1.3
1870 Female, age 42, unknown 1.3
2666 Male, age 74, left hemisphere 1.3
1830 Male, age 51, unknown 1.2
1833 Male, age 53, unknown 1.2
2411 Female, age 72, unknown 1.1
Dorsal raphe nucleus
nTPM: 1.1
1828 Male, age 53, unknown 1.2
2298 Female, age 72, unknown 1.2
2016 Female, age 72, unknown 1.1
2047 Male, age 72, unknown 1.0
2750 Male, age 76, both hemispheres 1.0
Inferior colliculus
nTPM: 1.3
2849 Male, age 72, unknown 1.4
2097 Female, age 72, unknown 1.3
1848 Female, age 42, unknown 1.2
1890 Male, age 53, unknown 1.2
Median raphe nucleus
nTPM: 1.3
2220 Male, age 76, midline 1.3
Periaquaductal grey, anterior
nTPM: 1.3
2502 Female, age 75, unknown 1.5
1795 Male, age 51, unknown 1.4
1947 Male, age 18, unknown 1.1
Periaquaductal grey, dorsal
nTPM: 1.5
2850 Male, age 76, both hemispheres 1.8
1831 Male, age 72, unknown 1.4
1840 Male, age 53, unknown 1.4
2464 Female, age 72, unknown 1.4
Periaquaductal grey, lateral
nTPM: 1.4
2140 Male, age 76, both hemispheres 1.6
2053 Male, age 18, unknown 1.3
2272 Male, age 74, both hemispheres 1.3
Pretectal area
nTPM: 1.3
1815 Male, age 53, unknown 1.5
2007 Male, age 72, unknown 1.5
2273 Male, age 74, both hemispheres 1.5
2407 Male, age 75, both hemispheres 1.5
1816 Male, age 51, unknown 1.4
1817 Female, age 42, unknown 1.4
2825 Male, age 18, unknown 1.3
1944 Female, age 72, unknown 1.2
2316 Male, age 76, right hemisphere 1.2
2667 Female, age 75, unknown 1.2
2224 Female, age 72, unknown 1.1
Red nucleus
nTPM: 1.4
2823 Male, age 76, right hemisphere 1.6
2725 Female, age 75, unknown 1.5
1865 Male, age 51, unknown 1.4
1904 Male, age 53, unknown 1.4
1954 Female, age 42, unknown 1.4
2227 Male, age 72, unknown 1.4
2584 Male, age 75, left hemisphere 1.4
1821 Female, age 72, unknown 1.3
2503 Female, age 72, unknown 1.3
2588 Male, age 74, left hemisphere 1.3
2785 Male, age 18, unknown 1.3
2769 Male, age 72, unknown 1.2
Substantia nigra
nTPM: 1.2
2699 Male, age 18, unknown 1.6
2665 Male, age 74, both hemispheres 1.5
1889 Female, age 72, unknown 1.4
2409 Female, age 72, unknown 1.3
1941 Male, age 53, unknown 1.2
2590 Female, age 75, unknown 1.1
1851 Male, age 51, unknown 1.0
1916 Female, age 42, unknown 1.0
2241 Male, age 72, unknown 1.0
2583 Male, age 75, right hemisphere 1.0
Superior colliculus
nTPM: 1.4
1913 Female, age 42, unknown 1.6
2664 Male, age 75, both hemispheres 1.6
1796 Male, age 53, unknown 1.5
1995 Male, age 72, unknown 1.5
2087 Female, age 72, unknown 1.4
2261 Male, age 18, unknown 1.3
2668 Female, age 75, unknown 1.3
1839 Male, age 51, unknown 1.2
2587 Male, age 74, left hemisphere 1.2
1895 Male, age 76, right hemisphere 1.0
Ventral tegmental area
nTPM: 1.2
1942 Male, age 51, unknown 1.5
2021 Male, age 53, unknown 1.2
2218 Male, age 76, both hemispheres 1.2
2223 Female, age 72, unknown 1.2
1915 Female, age 42, unknown 1.1
2410 Female, age 72, unknown 1.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.5
Samples: 139

Max nTPM: 2.5
Min nTPM: 0.2
Std nTPM: 0.3
Median nTPM: 0.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 1.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.8
Midbrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.7
Sample A Female 1.3
Sample B Female 0.8
Sample C Male 0.9
Sample D Male 0.7
Periaqueductal gray
nTPM: 0.5
Samples: 3

Max nTPM: 0.6
Min nTPM: 0.5
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.5
Superior colliculi
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.7
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Male 0.8
Sample B Male 0.8
Sample C Female 0.8
Sample D Female 0.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
100144943 Antisense, RP_110519_02_B07, Mouse strain C57BL/6J (56 days, male) 0.4
73497759 Antisense, RP_051121_01_F03, Mouse strain C57BL/6J (56 days, male) 0.1

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