MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.7 nTPM
HPA Brain:7.9 nTPM
GTEx:18.7 nTPM
FANTOM5:0.1 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.6
2586 Male, age 75, left hemisphere 8.8
2019 Male, age 18, unknown 7.1
1870 Female, age 42, unknown 4.6
1830 Male, age 51, unknown 1.9
2666 Male, age 74, left hemisphere 1.2
1827 Male, age 72, unknown 1.1
2411 Female, age 72, unknown 0.6
2828 Female, age 72, unknown 0.5
1833 Male, age 53, unknown 0.4
2219 Male, age 76, both hemispheres 0.0
Dorsal raphe nucleus
nTPM: 3.7
2047 Male, age 72, unknown 6.7
2298 Female, age 72, unknown 4.5
2750 Male, age 76, both hemispheres 3.4
1828 Male, age 53, unknown 2.8
2016 Female, age 72, unknown 0.9
Inferior colliculus
nTPM: 0.8
1890 Male, age 53, unknown 2.3
2097 Female, age 72, unknown 0.6
1848 Female, age 42, unknown 0.5
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 1.5
2220 Male, age 76, midline 1.5
Periaquaductal grey, anterior
nTPM: 3.1
1947 Male, age 18, unknown 3.7
1795 Male, age 51, unknown 3.4
2502 Female, age 75, unknown 2.2
Periaquaductal grey, dorsal
nTPM: 0.1
2464 Female, age 72, unknown 0.6
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.1
2053 Male, age 18, unknown 0.3
2272 Male, age 74, both hemispheres 0.2
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 3.1
1944 Female, age 72, unknown 9.3
2007 Male, age 72, unknown 6.6
1817 Female, age 42, unknown 5.9
2316 Male, age 76, right hemisphere 4.2
1816 Male, age 51, unknown 2.7
2667 Female, age 75, unknown 2.7
1815 Male, age 53, unknown 1.8
2224 Female, age 72, unknown 0.6
2273 Male, age 74, both hemispheres 0.6
2407 Male, age 75, both hemispheres 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 4.7
2503 Female, age 72, unknown 10.4
1865 Male, age 51, unknown 7.5
2785 Male, age 18, unknown 7.5
2588 Male, age 74, left hemisphere 6.1
1954 Female, age 42, unknown 5.9
2769 Male, age 72, unknown 4.5
1904 Male, age 53, unknown 4.0
2227 Male, age 72, unknown 3.8
1821 Female, age 72, unknown 3.2
2725 Female, age 75, unknown 2.5
2823 Male, age 76, right hemisphere 0.9
2584 Male, age 75, left hemisphere 0.6
Substantia nigra
nTPM: 7.9
2409 Female, age 72, unknown 22.5
1889 Female, age 72, unknown 14.0
1916 Female, age 42, unknown 12.0
2583 Male, age 75, right hemisphere 9.6
1851 Male, age 51, unknown 8.5
2590 Female, age 75, unknown 4.0
1941 Male, age 53, unknown 3.8
2665 Male, age 74, both hemispheres 2.1
2699 Male, age 18, unknown 1.6
2241 Male, age 72, unknown 0.4
Superior colliculus
nTPM: 1.9
1995 Male, age 72, unknown 4.8
1796 Male, age 53, unknown 3.8
2668 Female, age 75, unknown 3.1
1913 Female, age 42, unknown 3.0
2261 Male, age 18, unknown 2.2
2587 Male, age 74, left hemisphere 1.4
2087 Female, age 72, unknown 0.5
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 4.8
2410 Female, age 72, unknown 12.6
2218 Male, age 76, both hemispheres 4.0
1915 Female, age 42, unknown 3.7
2223 Female, age 72, unknown 3.3
2021 Male, age 53, unknown 2.9
1942 Male, age 51, unknown 2.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.7
Samples: 139

Max nTPM: 70.9
Min nTPM: 2.0
Std nTPM: 9.9
Median nTPM: 18.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 70.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 47.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 42.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 40.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 37.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 35.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 35.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 35.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 34.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org