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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
4.4
nTPM
HPA Brain:
126.8
nTPM
GTEx:
4.4
nTPM
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
126.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 89.1
2828
Female, age 72, unknown
150.9
2586
Male, age 75, left hemisphere
129.7
1827
Male, age 72, unknown
95.8
1870
Female, age 42, unknown
86.2
2219
Male, age 76, both hemispheres
83.0
2666
Male, age 74, left hemisphere
79.2
1833
Male, age 53, unknown
72.9
2411
Female, age 72, unknown
69.9
1830
Male, age 51, unknown
67.0
2019
Male, age 18, unknown
56.9
Dorsal raphe nucleus nTPM: 126.8
2298
Female, age 72, unknown
153.4
2047
Male, age 72, unknown
139.0
2016
Female, age 72, unknown
133.5
1828
Male, age 53, unknown
109.9
2750
Male, age 76, both hemispheres
98.2
Inferior colliculus nTPM: 85.3
1848
Female, age 42, unknown
96.4
1890
Male, age 53, unknown
86.5
2097
Female, age 72, unknown
84.4
2849
Male, age 72, unknown
73.9
Median raphe nucleus nTPM: 112.7
2220
Male, age 76, midline
112.7
Periaquaductal grey, anterior nTPM: 97.3
1947
Male, age 18, unknown
108.9
1795
Male, age 51, unknown
97.5
2502
Female, age 75, unknown
85.4
Periaquaductal grey, dorsal nTPM: 94.1
1840
Male, age 53, unknown
116.0
2850
Male, age 76, both hemispheres
92.5
2464
Female, age 72, unknown
87.1
1831
Male, age 72, unknown
80.5
Periaquaductal grey, lateral nTPM: 105.5
2053
Male, age 18, unknown
119.4
2140
Male, age 76, both hemispheres
106.3
2272
Male, age 74, both hemispheres
90.6
Pretectal area nTPM: 90.1
2224
Female, age 72, unknown
117.5
2667
Female, age 75, unknown
115.7
1944
Female, age 72, unknown
109.6
2273
Male, age 74, both hemispheres
99.6
2825
Male, age 18, unknown
89.6
1817
Female, age 42, unknown
82.0
1816
Male, age 51, unknown
79.2
2007
Male, age 72, unknown
79.1
1815
Male, age 53, unknown
78.9
2316
Male, age 76, right hemisphere
77.9
2407
Male, age 75, both hemispheres
62.4
Red nucleus nTPM: 86.2
2503
Female, age 72, unknown
110.8
2769
Male, age 72, unknown
110.5
2227
Male, age 72, unknown
101.6
2725
Female, age 75, unknown
93.1
1904
Male, age 53, unknown
87.5
1865
Male, age 51, unknown
85.7
1821
Female, age 72, unknown
84.6
1954
Female, age 42, unknown
82.6
2588
Male, age 74, left hemisphere
78.7
2823
Male, age 76, right hemisphere
72.4
2584
Male, age 75, left hemisphere
69.5
2785
Male, age 18, unknown
57.7
Substantia nigra nTPM: 109.2
1916
Female, age 42, unknown
159.8
1851
Male, age 51, unknown
148.9
2699
Male, age 18, unknown
131.0
1941
Male, age 53, unknown
118.2
2409
Female, age 72, unknown
109.6
1889
Female, age 72, unknown
103.3
2583
Male, age 75, right hemisphere
87.0
2590
Female, age 75, unknown
81.5
2665
Male, age 74, both hemispheres
79.1
2241
Male, age 72, unknown
73.9
Superior colliculus nTPM: 81.4
2261
Male, age 18, unknown
109.4
2087
Female, age 72, unknown
101.9
1796
Male, age 53, unknown
87.8
1995
Male, age 72, unknown
87.5
2668
Female, age 75, unknown
81.9
1913
Female, age 42, unknown
76.9
2587
Male, age 74, left hemisphere
74.7
1839
Male, age 51, unknown
70.4
1895
Male, age 76, right hemisphere
64.5
2664
Male, age 75, both hemispheres
58.4
Ventral tegmental area nTPM: 107.0
1915
Female, age 42, unknown
127.2
1942
Male, age 51, unknown
119.5
2218
Male, age 76, both hemispheres
109.2
2410
Female, age 72, unknown
107.3
2021
Male, age 53, unknown
98.7
2223
Female, age 72, unknown
80.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
4.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 4.4
Samples: 139
Max nTPM: 39.8
Min nTPM: 0.0
Std nTPM: 8.1
Median nTPM: 0.6
The Human Protein Atlas project is funded
