HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:16.7 nTPM
GTEx:16.6 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:42.1 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050166Antibody HPA076046
Glial cells LowNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.7
Sample id Sample description nTPM
Hippocampus
nTPM: 14.4
1898 Male, age 80, left hemisphere 17.1
1855 Male, age 76, left hemisphere 15.4
2621 Female, age 67, right hemisphere 14.3
2529 Female, age 94, left hemisphere 13.7
2148 Female, age 91, left hemisphere 13.0
1911 Female, age 85, right hemisphere 12.9
Dentate gyrus
nTPM: 13.2
2530 Female, age 94, left hemisphere 14.5
1927 Female, age 91, both hemispheres 14.3
2010 Male, age 76, both hemispheres 13.7
2246 Female, age 85, both hemispheres 12.8
2528 Male, age 74, both hemispheres 12.3
2531 Female, age 67, both hemispheres 11.5
Entorhinal gyrus
nTPM: 15.1
2764 Male, age 80, right hemisphere 17.6
1787 Male, age 76, left hemisphere 15.2
1938 Female, age 85, left hemisphere 15.0
2117 Female, age 91, right hemisphere 14.5
2613 Female, age 94, left hemisphere 14.3
2686 Male, age 75, right hemisphere 14.0
Hippocampus, CA1
nTPM: 14.4
2749 Male, age 80, left hemisphere 18.9
2527 Male, age 74, both hemispheres 17.5
1873 Female, age 85, both hemispheres 14.3
2082 Female, age 91, right hemisphere 10.8
2045 Male, age 76, both hemispheres 10.7
Hippocampus, CA2
nTPM: 15.1
1892 Male, age 76, both hemispheres 16.4
2437 Female, age 94, left hemisphere 16.1
2249 Male, age 74, both hemispheres 15.9
1963 Male, age 80, left hemisphere 15.8
2113 Female, age 91, right hemisphere 13.5
1940 Female, age 85, left hemisphere 12.6
Hippocampus, CA3
nTPM: 14.5
2137 Male, age 80, left hemisphere 16.2
1867 Male, age 76, both hemispheres 15.0
2436 Male, age 74, both hemispheres 14.4
2620 Female, age 94, left hemisphere 14.4
1891 Female, age 85, both hemispheres 13.9
2861 Female, age 67, both hemispheres 13.2
Parahippocampal cortex
nTPM: 14.7
1850 Male, age 80, both hemispheres 17.3
1990 Female, age 91, right hemisphere 16.8
2245 Female, age 91, both hemispheres 16.4
1933 Female, age 85, both hemispheres 15.8
2250 Female, age 67, right hemisphere 15.0
2018 Male, age 76, both hemispheres 14.0
2532 Female, age 72, left hemisphere 13.4
2622 Female, age 67, right hemisphere 13.4
2693 Female, age 94, both hemispheres 13.2
2692 Male, age 74, both hemispheres 12.2
Perirhinal gyrus
nTPM: 16.7
1794 Male, age 80, right hemisphere 18.7
1847 Female, age 91, left hemisphere 18.4
1841 Female, age 85, right hemisphere 16.5
2521 Female, age 94, right hemisphere 15.7
2848 Male, age 76, right hemisphere 14.2
Subiculum
nTPM: 14.9
2438 Female, age 94, left hemisphere 19.6
1977 Female, age 85, both hemispheres 17.4
2619 Male, age 74, both hemispheres 14.8
1901 Male, age 80, both hemispheres 14.7
2042 Male, age 76, both hemispheres 12.8
2729 Female, age 91, right hemisphere 10.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.6
Samples: 197

Max nTPM: 39.7
Min nTPM: 10.0
Std nTPM: 3.9
Median nTPM: 16.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 39.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 30.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 30.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 27.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 25.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 25.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 25.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 25.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 24.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 24.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 24.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.2
FF:10153-102I9 76 years, female 29.8
FF:10169-103B7 60 years, female 16.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.8
Pig sample Sample description nTPM
Subiculum
nTPM: 20.2
Samples: 4

Max nTPM: 27.5
Min nTPM: 17.0
Sample A Female 27.5
Sample B Female 19.1
Sample C Male 17.3
Sample D Male 17.0
Dorsal hippocampus
nTPM: 23.8
Samples: 4

Max nTPM: 28.4
Min nTPM: 20.7
Sample A Female 28.4
Sample B Female 21.1
Sample C Male 25.1
Sample D Male 20.7
Entorhinal cortex
nTPM: 21.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 17.8
Sample A Female 22.1
Sample B Female 25.1
Sample C Male 20.3
Sample D Male 17.8
Ventral hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 21.4
Min nTPM: 16.7
Sample A Female 20.4
Sample B Female 16.7
Sample C Male 21.4
Sample D Male 20.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 42.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.1
Samples: 4

Max nTPM: 45.1
Min nTPM: 38.8
Sample A Male 40.5
Sample B Male 44.0
Sample C Female 45.1
Sample D Female 38.8
Hippocampal formation
nTPM: 41.3
Samples: 4

Max nTPM: 47.6
Min nTPM: 35.8
Sample A Male 47.6
Sample B Male 35.8
Sample C Female 41.6
Sample D Female 40.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
69116769 Antisense, RP_050321_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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