MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.3 nTPM
HPA Brain:19.2 nTPM
GTEx:2.3 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Mouse:3.2 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
2586 Male, age 75, left hemisphere 18.7
2219 Male, age 76, both hemispheres 17.9
2828 Female, age 72, unknown 16.6
1827 Male, age 72, unknown 15.8
1830 Male, age 51, unknown 14.6
1833 Male, age 53, unknown 14.6
2019 Male, age 18, unknown 14.2
1870 Female, age 42, unknown 14.1
2411 Female, age 72, unknown 13.4
2666 Male, age 74, left hemisphere 11.3
Dorsal raphe nucleus
nTPM: 15.4
2016 Female, age 72, unknown 18.2
2047 Male, age 72, unknown 15.2
2298 Female, age 72, unknown 15.2
1828 Male, age 53, unknown 14.7
2750 Male, age 76, both hemispheres 13.8
Inferior colliculus
nTPM: 15.1
1848 Female, age 42, unknown 16.7
2849 Male, age 72, unknown 15.6
1890 Male, age 53, unknown 14.1
2097 Female, age 72, unknown 13.9
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 14.6
1795 Male, age 51, unknown 16.3
1947 Male, age 18, unknown 14.3
2502 Female, age 75, unknown 13.1
Periaquaductal grey, dorsal
nTPM: 17.6
2850 Male, age 76, both hemispheres 18.6
1831 Male, age 72, unknown 17.7
1840 Male, age 53, unknown 17.6
2464 Female, age 72, unknown 16.4
Periaquaductal grey, lateral
nTPM: 19.2
2140 Male, age 76, both hemispheres 21.2
2053 Male, age 18, unknown 18.4
2272 Male, age 74, both hemispheres 17.9
Pretectal area
nTPM: 16.5
2273 Male, age 74, both hemispheres 20.6
2667 Female, age 75, unknown 18.4
2825 Male, age 18, unknown 18.2
2316 Male, age 76, right hemisphere 17.9
2224 Female, age 72, unknown 17.8
1815 Male, age 53, unknown 16.8
2407 Male, age 75, both hemispheres 16.1
1944 Female, age 72, unknown 15.4
1816 Male, age 51, unknown 13.4
2007 Male, age 72, unknown 13.4
1817 Female, age 42, unknown 13.1
Red nucleus
nTPM: 15.0
1904 Male, age 53, unknown 16.5
1865 Male, age 51, unknown 16.1
2227 Male, age 72, unknown 16.1
2503 Female, age 72, unknown 15.9
2823 Male, age 76, right hemisphere 15.5
2769 Male, age 72, unknown 15.4
2588 Male, age 74, left hemisphere 15.0
2725 Female, age 75, unknown 14.9
1954 Female, age 42, unknown 14.1
1821 Female, age 72, unknown 13.6
2584 Male, age 75, left hemisphere 13.6
2785 Male, age 18, unknown 12.9
Substantia nigra
nTPM: 14.8
2590 Female, age 75, unknown 17.0
2699 Male, age 18, unknown 16.7
2583 Male, age 75, right hemisphere 16.2
1851 Male, age 51, unknown 15.9
1916 Female, age 42, unknown 15.6
1889 Female, age 72, unknown 14.1
1941 Male, age 53, unknown 13.6
2409 Female, age 72, unknown 13.3
2241 Male, age 72, unknown 12.6
2665 Male, age 74, both hemispheres 12.6
Superior colliculus
nTPM: 16.4
1913 Female, age 42, unknown 18.9
1995 Male, age 72, unknown 18.9
2087 Female, age 72, unknown 17.7
2261 Male, age 18, unknown 16.6
2664 Male, age 75, both hemispheres 15.8
1839 Male, age 51, unknown 15.7
1796 Male, age 53, unknown 15.6
2587 Male, age 74, left hemisphere 15.6
1895 Male, age 76, right hemisphere 15.2
2668 Female, age 75, unknown 13.9
Ventral tegmental area
nTPM: 15.4
2021 Male, age 53, unknown 17.4
2223 Female, age 72, unknown 15.9
1915 Female, age 42, unknown 15.2
1942 Male, age 51, unknown 15.1
2218 Male, age 76, both hemispheres 15.1
2410 Female, age 72, unknown 13.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.3
Samples: 139

Max nTPM: 7.7
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 2.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 7.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 6.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 6.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 5.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 5.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 5.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 5.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 5.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 4.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 4.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 4.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.6
FF:10158-103A5 76 years, female 17.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.7
Sample A Male 2.7
Sample B Male 3.2
Sample C Female 3.6
Sample D Female 3.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 12.9
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 4.1
79354794 Antisense, RP_070813_03_B01, Mouse strain C57BL/6J (56 days, male) 1.4
74277422 Antisense, RP_051130_03_D11, Mouse strain C57BL/6J (56 days, male) 0.6

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