PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:10.9 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:161.8 nTPM
Mouse:3.5 nTPM
Allen mouse:5.1 Expression energy

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 10.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 8.0
1984 Male, age 76, both hemispheres 9.9
2301 Female, age 85, both hemispheres 7.8
2090 Male, age 80, both hemispheres 7.5
2188 Female, age 91, both hemispheres 6.9
Area postrema
nTPM: 10.9
2799 Male, age 61, both hemispheres 14.0
2054 Male, age 76, both hemispheres 9.8
2306 Male, age 80, both hemispheres 8.9
Dorsal cochlear nucleus
nTPM: 7.2
2058 Male, age 76, both hemispheres 8.3
2370 Male, age 61, both hemispheres 7.6
2187 Female, age 91, both hemispheres 7.2
2378 Male, age 80, both hemispheres 6.5
2802 Male, age 74, right hemisphere 6.2
Dorsal medullary reticular nucleus
nTPM: 7.2
2373 Male, age 61, both hemispheres 7.4
2088 Male, age 76, both hemispheres 7.3
2040 Female, age 85, both hemispheres 6.9
Dorsal motor vagal complex
nTPM: 8.2
2185 Male, age 76, both hemispheres 10.7
2844 Male, age 55, unknown 8.9
2797 Male, age 61, both hemispheres 8.3
2813 Female, age 72, unknown 8.3
2000 Male, age 74, unknown 7.9
2133 Female, age 91, both hemispheres 7.5
2807 Female, age 85, both hemispheres 7.3
2643 Male, age 74, both hemispheres 6.8
Dorsal tegmental nucleus
nTPM: 7.3
2083 Male, age 80, both hemispheres 7.8
1936 Male, age 76, left hemisphere 7.5
2326 Male, age 74, both hemispheres 7.2
2358 Male, age 61, both hemispheres 6.8
Dorsolateral tegmental area
nTPM: 8.4
2360 Male, age 74, both hemispheres 9.5
2337 Male, age 61, both hemispheres 8.9
2654 Male, age 80, both hemispheres 8.0
2751 Female, age 85, both hemispheres 8.0
2141 Male, age 76, both hemispheres 7.5
Gigantocellular reticular nuclei, medullary
nTPM: 7.0
2314 Male, age 61, both hemispheres 9.8
1876 Female, age 85, both hemispheres 7.5
2022 Male, age 76, right hemisphere 7.0
2387 Female, age 91, both hemispheres 6.1
2462 Male, age 74, both hemispheres 6.1
2310 Male, age 80, both hemispheres 5.7
Gigantocellular reticular nuclei, pars
nTPM: 6.9
2336 Male, age 61, both hemispheres 8.4
2084 Female, age 85, both hemispheres 7.9
2706 Male, age 80, both hemispheres 6.3
2168 Male, age 76, both hemispheres 6.0
2330 Male, age 80, both hemispheres 5.9
Inferior olive
nTPM: 9.8
2085 Female, age 85, both hemispheres 11.5
2563 Male, age 74, both hemispheres 11.4
2178 Male, age 61, both hemispheres 9.7
2628 Female, age 91, both hemispheres 8.4
2379 Male, age 80, both hemispheres 7.9
Kolliker-Fuse nucleus
nTPM: 8.3
2315 Male, age 76, right hemisphere 11.7
2163 Male, age 80, both hemispheres 7.9
2793 Female, age 91, left hemisphere 5.3
Lateral lemniscal nuclei
nTPM: 5.9
2746 Female, age 85, left hemisphere 6.5
2169 Male, age 76, both hemispheres 6.4
2036 Male, age 80, both hemispheres 5.9
2320 Female, age 91, left hemisphere 5.6
2453 Male, age 74, right hemisphere 4.9
Lateral medullary reticular nucleus
nTPM: 8.6
2804 Female, age 91, both hemispheres 9.1
2852 Male, age 80, both hemispheres 9.1
2190 Female, age 85, both hemispheres 8.8
2374 Male, age 61, both hemispheres 8.8
2305 Male, age 74, both hemispheres 8.7
2044 Male, age 76, both hemispheres 6.9
Lateral parabrachial nucleus
nTPM: 8.2
2792 Male, age 76, both hemispheres 9.2
2139 Female, age 85, right hemisphere 8.7
2790 Male, age 61, both hemispheres 7.9
2013 Male, age 80, both hemispheres 7.0
Lateral vestibular nucleus
nTPM: 7.8
2311 Male, age 80, both hemispheres 7.9
2184 Male, age 76, both hemispheres 7.8
Locus coeruleus
nTPM: 8.7
2788 Male, age 74, unknown 10.4
2014 Male, age 55, unknown 9.7
1980 Male, age 76, both hemispheres 9.5
2123 Female, age 91, both hemispheres 9.1
2317 Female, age 72, unknown 8.4
2162 Male, age 80, both hemispheres 7.4
2720 Male, age 74, both hemispheres 6.2
Medial olivary nucleus
nTPM: 9.7
1943 Male, age 61, both hemispheres 10.9
2138 Female, age 91, both hemispheres 9.9
1962 Male, age 76, both hemispheres 9.8
2851 Male, age 80, both hemispheres 8.0
Medial parabrachial nucleus
nTPM: 8.3
2463 Female, age 85, right hemisphere 10.8
2156 Male, age 61, both hemispheres 9.1
2786 Male, age 76, both hemispheres 8.0
2170 Female, age 91, both hemispheres 7.0
2854 Male, age 80, both hemispheres 6.9
Medial periolivary nuclei
nTPM: 6.6
2791 Male, age 74, right hemisphere 8.8
2063 Male, age 76, both hemispheres 6.4
2171 Female, age 85, both hemispheres 6.2
2081 Male, age 80, both hemispheres 5.9
2458 Female, age 91, both hemispheres 5.8
Medial vestibular nucleus
nTPM: 7.2
2743 Female, age 85, both hemispheres 7.6
2801 Male, age 74, both hemispheres 7.5
2093 Male, age 80, both hemispheres 7.4
2134 Male, age 76, both hemispheres 7.3
2803 Female, age 91, both hemispheres 7.2
2624 Male, age 61, both hemispheres 6.4
Motor facial nucleus
nTPM: 6.1
2126 Male, age 61, both hemispheres 7.3
2365 Male, age 74, right hemisphere 6.2
2697 Female, age 85, both hemispheres 6.1
2062 Male, age 76, both hemispheres 6.0
2795 Female, age 91, both hemispheres 5.8
2327 Male, age 80, both hemispheres 5.1
Motor hypoglossal nucleus
nTPM: 7.4
2277 Male, age 76, both hemispheres 9.2
2125 Female, age 91, both hemispheres 7.5
2461 Male, age 61, both hemispheres 7.3
2132 Female, age 85, both hemispheres 6.6
2182 Male, age 80, both hemispheres 6.3
Motor trigeminal nucleus
nTPM: 6.5
2335 Male, age 61, both hemispheres 8.9
2309 Male, age 76, both hemispheres 7.7
2321 Female, age 91, both hemispheres 5.7
2079 Male, age 80, both hemispheres 5.5
2560 Male, age 74, both hemispheres 5.0
Nuclei of the trapezoid body
nTPM: 5.8
2368 Female, age 91, both hemispheres 6.4
2735 Female, age 85, both hemispheres 6.1
1983 Male, age 76, both hemispheres 6.0
2159 Male, age 61, both hemispheres 5.2
2166 Male, age 80, both hemispheres 5.2
Nucleus ambiguus
nTPM: 9.9
2071 Male, age 76, both hemispheres 11.5
2096 Female, age 85, both hemispheres 8.3
Nucleus cuneatus
nTPM: 7.7
2100 Male, age 76, both hemispheres 9.1
2808 Female, age 85, both hemispheres 8.9
2131 Male, age 76, both hemispheres 8.5
2562 Male, age 61, both hemispheres 7.9
2564 Male, age 74, both hemispheres 7.5
2376 Male, age 61, both hemispheres 7.4
2381 Male, age 80, both hemispheres 7.2
2380 Male, age 80, both hemispheres 6.9
2805 Female, age 91, both hemispheres 6.0
Nucleus gracilis
nTPM: 8.6
2627 Male, age 74, both hemispheres 10.2
2299 Female, age 85, both hemispheres 7.8
2382 Male, age 80, both hemispheres 7.8
Nucleus raphe magnus
nTPM: 5.8
2455 Male, age 74, both hemispheres 7.0
2051 Male, age 76, both hemispheres 6.3
2172 Female, age 85, both hemispheres 5.9
2328 Male, age 80, both hemispheres 5.6
2160 Male, age 61, both hemispheres 5.3
2459 Female, age 91, both hemispheres 4.9
Nucleus raphe obscurus
nTPM: 10.2
2142 Male, age 76, midline 13.8
2800 Male, age 61, midline 8.6
2845 Female, age 85, midline 8.3
Nucleus raphe pallidus
nTPM: 9.9
2145 Male, age 76, midline 11.9
1924 Male, age 61, midline 10.7
2183 Male, age 80, midline 7.1
Nucleus tractus solitarii
nTPM: 7.3
2191 Female, age 85, both hemispheres 8.0
2144 Female, age 91, right hemisphere 7.7
2656 Male, age 76, both hemispheres 7.4
2307 Male, age 80, both hemispheres 6.0
Paramedian reticular nucleus
nTPM: 6.5
2057 Male, age 80, both hemispheres 7.3
2052 Male, age 76, both hemispheres 6.6
2313 Male, age 61, both hemispheres 6.2
2050 Female, age 85, both hemispheres 6.0
Parvicellular reticular nuclei
nTPM: 6.9
2119 Male, age 80, both hemispheres 7.7
2095 Male, age 76, both hemispheres 7.2
2558 Male, age 74, both hemispheres 5.9
Parvicellular reticular nuclei, medullary
nTPM: 7.2
2189 Female, age 91, both hemispheres 7.6
2091 Female, age 85, both hemispheres 7.3
2181 Male, age 80, left hemisphere 6.8
Pedunculopontine tegmental nucleus
nTPM: 8.8
1921 Female, age 85, both hemispheres 9.0
2338 Male, age 61, both hemispheres 9.0
2334 Male, age 80, both hemispheres 8.3
Peritrigeminal nucleus
nTPM: 8.7
2067 Female, age 85, both hemispheres 9.5
2136 Male, age 76, both hemispheres 8.5
2179 Male, age 61, both hemispheres 8.1
Pontine nuclei
nTPM: 5.7
1968 Male, age 76, left hemisphere 6.3
2319 Female, age 91, both hemispheres 6.2
2115 Male, age 80, left hemisphere 6.0
2787 Female, age 85, both hemispheres 5.9
2454 Male, age 74, left hemisphere 5.7
2727 Male, age 61, right hemisphere 5.5
2109 Female, age 72, unknown 4.9
1863 Male, age 55, unknown 4.8
Pontine raphe nucleus
nTPM: 7.4
2853 Male, age 76, midline 8.0
2122 Female, age 85, midline 6.9
Posteroventral cochlear nucleus
nTPM: 7.5
2752 Female, age 85, both hemispheres 8.0
2371 Male, age 61, both hemispheres 7.5
2070 Male, age 76, both hemispheres 7.3
2135 Female, age 91, both hemispheres 7.3
2341 Male, age 80, both hemispheres 7.3
Prepositus hypoglossal nucleus
nTPM: 7.3
2086 Male, age 80, both hemispheres 7.8
2855 Female, age 85, right hemisphere 6.9
Principal sensory trigeminal nucleus
nTPM: 6.5
2324 Male, age 76, both hemispheres 8.3
2008 Male, age 80, left hemisphere 6.2
2158 Male, age 61, both hemispheres 5.6
2367 Female, age 91, left hemisphere 5.6
Reticular pontine nucleus, caudal
nTPM: 6.1
2092 Male, age 76, both hemispheres 7.3
2559 Male, age 74, both hemispheres 6.2
2332 Male, age 80, right hemisphere 5.7
2457 Female, age 91, both hemispheres 5.4
Reticular pontine nucleus, oral
nTPM: 6.6
1939 Male, age 80, both hemispheres 8.2
2167 Male, age 76, both hemispheres 8.1
2012 Female, age 85, both hemispheres 6.6
2366 Female, age 91, both hemispheres 5.7
2361 Male, age 74, both hemispheres 4.5
Reticulotegmental nucleus
nTPM: 6.7
2322 Female, age 91, both hemispheres 7.4
2333 Male, age 80, both hemispheres 7.0
2325 Male, age 76, both hemispheres 6.5
2452 Male, age 74, both hemispheres 5.9
Spinal trigeminal nucleus, caudal
nTPM: 7.4
2308 Male, age 80, both hemispheres 8.1
2312 Male, age 61, both hemispheres 8.0
2642 Male, age 74, both hemispheres 7.7
2447 Male, age 76, both hemispheres 7.5
2390 Female, age 91, both hemispheres 6.0
Spinal trigeminal nucleus, interpolar
nTPM: 6.4
2386 Female, age 85, both hemispheres 7.1
2033 Male, age 80, both hemispheres 6.3
2066 Male, age 76, right hemisphere 6.3
2625 Male, age 61, both hemispheres 6.3
2389 Female, age 91, both hemispheres 6.0
Spinal trigeminal nucleus, oral
nTPM: 7.0
2737 Female, age 85, both hemispheres 7.9
1978 Male, age 76, both hemispheres 7.5
2164 Male, age 80, both hemispheres 5.6
Spinal vestibular nucleus
nTPM: 7.6
2186 Female, age 91, both hemispheres 8.6
2748 Male, age 76, both hemispheres 7.8
2806 Female, age 85, both hemispheres 7.7
2796 Male, age 61, both hemispheres 7.5
2780 Male, age 80, both hemispheres 7.4
2384 Male, age 74, both hemispheres 6.6
Subcoeruleus area
nTPM: 7.3
2369 Female, age 85, left hemisphere 8.6
2323 Female, age 91, left hemisphere 8.0
2089 Male, age 76, left hemisphere 7.2
2451 Male, age 74, both hemispheres 6.7
1958 Male, age 80, both hemispheres 6.1
Superior olive
nTPM: 6.1
2364 Male, age 74, right hemisphere 7.4
2020 Male, age 76, both hemispheres 6.4
1875 Female, age 85, both hemispheres 5.7
2329 Male, age 80, right hemisphere 5.7
2561 Female, age 91, both hemispheres 5.2
Superior vestibular nucleus
nTPM: 8.8
2061 Male, age 76, both hemispheres 9.7
2383 Male, age 74, both hemispheres 9.6
2015 Male, age 80, both hemispheres 7.2
Ventral medullary reticular nucleus
nTPM: 8.0
2372 Male, age 61, both hemispheres 8.2
2060 Male, age 76, both hemispheres 7.8
Ventral periolivary nuclei
nTPM: 6.1
2130 Female, age 85, both hemispheres 7.1
2023 Male, age 76, both hemispheres 6.6
2794 Female, age 91, left hemisphere 5.3
2165 Male, age 80, both hemispheres 5.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 7.5
1986 Male, age 76, both hemispheres 8.2
2180 Male, age 61, both hemispheres 7.9
2118 Male, age 80, both hemispheres 7.3
2302 Female, age 91, both hemispheres 7.3
2741 Female, age 85, both hemispheres 7.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 6.8
2359 Male, age 61, both hemispheres 8.5
1959 Male, age 76, both hemispheres 7.2
2840 Female, age 85, both hemispheres 6.7
2161 Male, age 80, both hemispheres 6.3
2456 Female, age 91, both hemispheres 6.1
2449 Male, age 74, both hemispheres 6.0

PONS AND MEDULLA - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 4.2
FF:10165-103B3 76 years, female 5.1
FF:10182-103D2 60 years, female 3.2
Medulla oblongata
Scaled Tags Per Million: 6.3
FF:10038-101F2 18-64 years, mixed 8.6
FF:10155-103A2 76 years, female 5.2
FF:10174-103C3 60 years, female 5.0
Pons
Scaled Tags Per Million: 5.5
FF:10033-101E6 18-54 years, mixed 5.5

PONS AND MEDULLA - Pig RNA-seqi
Average nTPM 161.8
Pig sample Sample description nTPM
158.1158.9162.7156.7159.4020406080100120140160
 		Medulla oblongata
nTPM: 161.8
Samples: 4

Max nTPM: 172.7
Min nTPM: 156.7
Sample A Female 172.7
Sample B Female 158.5
Sample C Male 159.4
Sample D Male 156.7
142.8150.7168.7131.9154.9020406080100120140160180200
 		Pons
nTPM: 160.8
Samples: 4

Max nTPM: 210.1
Min nTPM: 131.9
Sample A Female 210.1
Sample B Female 146.4
Sample C Male 131.9
Sample D Male 154.9

PONS AND MEDULLA - Mouse RNA-seqi
Average nTPM 3.5
Mouse sample Sample description nTPM
2.83.34.02.74.70.00.51.01.52.02.53.03.54.04.5
 		Pons and medulla
nTPM: 3.5
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.7
Sample A Male 4.7
Sample B Male 3.8
Sample C Female 2.8
Sample D Female 2.7

PONS AND MEDULLA - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 5.0
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 10.0
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 2.4
70784878 Antisense, RP_050706_01_D08, Mouse strain C57BL/6J (56 days, male) 0.1
Pons
Expression energy: 5.1
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 10.2
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 2.8
70784878 Antisense, RP_050706_01_D08, Mouse strain C57BL/6J (56 days, male) 0.0

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