HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:6.3 nTPM
HPA Brain:17.0 nTPM
GTEx:6.3 nTPM
FANTOM5:64.7 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:57.9 nTPM
Allen mouse:3.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019130
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.0
Sample id Sample description nTPM
Hippocampus
nTPM: 13.4
2148 Female, age 91, left hemisphere 14.8
2529 Female, age 94, left hemisphere 14.1
1898 Male, age 80, left hemisphere 13.3
2621 Female, age 67, right hemisphere 13.2
1855 Male, age 76, left hemisphere 13.1
1911 Female, age 85, right hemisphere 12.1
Dentate gyrus
nTPM: 14.1
2528 Male, age 74, both hemispheres 14.6
2531 Female, age 67, both hemispheres 14.6
1927 Female, age 91, both hemispheres 14.5
2530 Female, age 94, left hemisphere 14.5
2246 Female, age 85, both hemispheres 13.8
2010 Male, age 76, both hemispheres 12.8
Entorhinal gyrus
nTPM: 14.2
2686 Male, age 75, right hemisphere 14.8
2613 Female, age 94, left hemisphere 14.6
1787 Male, age 76, left hemisphere 14.4
1938 Female, age 85, left hemisphere 14.1
2764 Male, age 80, right hemisphere 14.1
2117 Female, age 91, right hemisphere 13.0
Hippocampus, CA1
nTPM: 14.2
2749 Male, age 80, left hemisphere 15.3
2045 Male, age 76, both hemispheres 15.0
2082 Female, age 91, right hemisphere 14.2
2527 Male, age 74, both hemispheres 13.5
1873 Female, age 85, both hemispheres 13.2
Hippocampus, CA2
nTPM: 14.9
1940 Female, age 85, left hemisphere 17.0
2437 Female, age 94, left hemisphere 16.2
1892 Male, age 76, both hemispheres 15.1
2113 Female, age 91, right hemisphere 15.1
1963 Male, age 80, left hemisphere 13.7
2249 Male, age 74, both hemispheres 12.1
Hippocampus, CA3
nTPM: 15.0
2620 Female, age 94, left hemisphere 16.9
2137 Male, age 80, left hemisphere 16.1
2861 Female, age 67, both hemispheres 15.6
1867 Male, age 76, both hemispheres 14.5
1891 Female, age 85, both hemispheres 13.6
2436 Male, age 74, both hemispheres 13.2
Parahippocampal cortex
nTPM: 15.7
2693 Female, age 94, both hemispheres 17.5
1850 Male, age 80, both hemispheres 16.3
2250 Female, age 67, right hemisphere 16.1
1933 Female, age 85, both hemispheres 15.8
1990 Female, age 91, right hemisphere 15.6
2018 Male, age 76, both hemispheres 15.6
2692 Male, age 74, both hemispheres 15.2
2622 Female, age 67, right hemisphere 15.0
2532 Female, age 72, left hemisphere 14.9
2245 Female, age 91, both hemispheres 14.7
Perirhinal gyrus
nTPM: 17.0
1841 Female, age 85, right hemisphere 18.3
2848 Male, age 76, right hemisphere 17.2
1794 Male, age 80, right hemisphere 16.6
2521 Female, age 94, right hemisphere 16.4
1847 Female, age 91, left hemisphere 16.3
Subiculum
nTPM: 14.4
2619 Male, age 74, both hemispheres 15.5
2729 Female, age 91, right hemisphere 15.0
2438 Female, age 94, left hemisphere 14.7
1977 Female, age 85, both hemispheres 14.3
1901 Male, age 80, both hemispheres 13.7
2042 Male, age 76, both hemispheres 13.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 6.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.3
Samples: 197

Max nTPM: 8.9
Min nTPM: 4.5
Std nTPM: 0.8
Median nTPM: 6.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 8.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 8.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 8.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 8.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 8.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 8.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 8.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 8.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 7.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 7.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 7.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.7
FF:10153-102I9 76 years, female 65.1
FF:10169-103B7 60 years, female 64.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.0
Pig sample Sample description nTPM
Subiculum
nTPM: 31.8
Samples: 4

Max nTPM: 37.0
Min nTPM: 28.4
Sample A Female 37.0
Sample B Female 31.1
Sample C Male 28.4
Sample D Male 30.5
Dorsal hippocampus
nTPM: 33.0
Samples: 4

Max nTPM: 38.0
Min nTPM: 28.5
Sample A Female 38.0
Sample B Female 28.5
Sample C Male 34.9
Sample D Male 30.6
Entorhinal cortex
nTPM: 38.0
Samples: 4

Max nTPM: 43.8
Min nTPM: 33.9
Sample A Female 37.7
Sample B Female 43.8
Sample C Male 33.9
Sample D Male 36.4
Ventral hippocampus
nTPM: 30.8
Samples: 4

Max nTPM: 34.7
Min nTPM: 28.8
Sample A Female 34.7
Sample B Female 29.1
Sample C Male 30.5
Sample D Male 28.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.2
Samples: 4

Max nTPM: 57.0
Min nTPM: 50.9
Sample A Male 53.0
Sample B Male 57.0
Sample C Female 50.9
Sample D Female 55.7
Hippocampal formation
nTPM: 57.9
Samples: 4

Max nTPM: 66.3
Min nTPM: 50.1
Sample A Male 56.9
Sample B Male 58.1
Sample C Female 66.3
Sample D Female 50.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
70743900 Antisense, RP_050725_02_A06, Mouse strain C57BL/6J (56 days, male) 4.7
67787357 Antisense, RP_040920_01_A12, Mouse strain C57BL/6J (56 days, male) 2.0

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