MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:50.6 nTPM
GTEx:24.3 nTPM
FANTOM5:115.9 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:4.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.9
2019 Male, age 18, unknown 48.5
1830 Male, age 51, unknown 46.2
1833 Male, age 53, unknown 42.9
2411 Female, age 72, unknown 42.2
2586 Male, age 75, left hemisphere 40.3
1870 Female, age 42, unknown 39.5
2666 Male, age 74, left hemisphere 32.9
2828 Female, age 72, unknown 32.9
1827 Male, age 72, unknown 22.4
2219 Male, age 76, both hemispheres 21.4
Dorsal raphe nucleus
nTPM: 23.8
2750 Male, age 76, both hemispheres 46.6
1828 Male, age 53, unknown 23.6
2016 Female, age 72, unknown 22.8
2047 Male, age 72, unknown 15.8
2298 Female, age 72, unknown 10.0
Inferior colliculus
nTPM: 21.8
1890 Male, age 53, unknown 26.6
2849 Male, age 72, unknown 21.5
1848 Female, age 42, unknown 21.1
2097 Female, age 72, unknown 18.0
Median raphe nucleus
nTPM: 19.8
2220 Male, age 76, midline 19.8
Periaquaductal grey, anterior
nTPM: 17.3
1947 Male, age 18, unknown 19.6
1795 Male, age 51, unknown 16.2
2502 Female, age 75, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 14.4
2464 Female, age 72, unknown 23.4
1831 Male, age 72, unknown 18.6
2850 Male, age 76, both hemispheres 8.0
1840 Male, age 53, unknown 7.7
Periaquaductal grey, lateral
nTPM: 17.5
2272 Male, age 74, both hemispheres 22.3
2053 Male, age 18, unknown 20.3
2140 Male, age 76, both hemispheres 9.9
Pretectal area
nTPM: 20.5
2407 Male, age 75, both hemispheres 35.4
1815 Male, age 53, unknown 27.8
2316 Male, age 76, right hemisphere 27.6
2825 Male, age 18, unknown 22.8
2007 Male, age 72, unknown 22.4
1817 Female, age 42, unknown 21.1
2273 Male, age 74, both hemispheres 17.8
2224 Female, age 72, unknown 13.7
2667 Female, age 75, unknown 12.7
1944 Female, age 72, unknown 12.4
1816 Male, age 51, unknown 11.5
Red nucleus
nTPM: 50.6
1865 Male, age 51, unknown 62.5
2584 Male, age 75, left hemisphere 59.7
1821 Female, age 72, unknown 56.2
1904 Male, age 53, unknown 54.5
2823 Male, age 76, right hemisphere 52.0
2227 Male, age 72, unknown 50.4
2769 Male, age 72, unknown 50.4
2785 Male, age 18, unknown 49.9
2588 Male, age 74, left hemisphere 46.6
2725 Female, age 75, unknown 43.1
2503 Female, age 72, unknown 41.0
1954 Female, age 42, unknown 40.7
Substantia nigra
nTPM: 24.8
2583 Male, age 75, right hemisphere 39.5
2590 Female, age 75, unknown 34.0
1851 Male, age 51, unknown 26.0
1889 Female, age 72, unknown 25.0
1941 Male, age 53, unknown 23.6
2409 Female, age 72, unknown 23.1
2241 Male, age 72, unknown 20.6
2699 Male, age 18, unknown 20.5
1916 Female, age 42, unknown 18.0
2665 Male, age 74, both hemispheres 17.6
Superior colliculus
nTPM: 28.4
1913 Female, age 42, unknown 43.2
1995 Male, age 72, unknown 39.3
1895 Male, age 76, right hemisphere 35.3
2668 Female, age 75, unknown 35.0
2587 Male, age 74, left hemisphere 31.8
1839 Male, age 51, unknown 29.1
2664 Male, age 75, both hemispheres 20.7
1796 Male, age 53, unknown 19.7
2087 Female, age 72, unknown 15.7
2261 Male, age 18, unknown 13.9
Ventral tegmental area
nTPM: 30.5
2223 Female, age 72, unknown 54.5
2410 Female, age 72, unknown 34.1
1942 Male, age 51, unknown 26.4
2021 Male, age 53, unknown 24.6
2218 Male, age 76, both hemispheres 23.1
1915 Female, age 42, unknown 20.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 139

Max nTPM: 105.1
Min nTPM: 4.5
Std nTPM: 14.9
Median nTPM: 21.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 105.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 73.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 69.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 66.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 59.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 54.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 53.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 47.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 43.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.9
FF:10158-103A5 76 years, female 115.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 9.4
Min nTPM: 4.5
Sample A Female 5.4
Sample B Female 4.5
Sample C Male 5.5
Sample D Male 9.4
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 7.2
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 7.2
Sample C Male 4.4
Sample D Male 6.7
Periaqueductal gray
nTPM: 5.7
Samples: 3

Max nTPM: 6.4
Min nTPM: 4.5
Sample B Female 6.4
Sample C Male 4.5
Sample D Male 6.1
Superior colliculi
nTPM: 4.9
Samples: 4

Max nTPM: 6.4
Min nTPM: 2.9
Sample A Female 5.5
Sample B Female 2.9
Sample C Male 4.9
Sample D Male 6.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.1
Sample A Male 4.1
Sample B Male 4.2
Sample C Female 4.7
Sample D Female 5.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70300061 Antisense, RP_050602_04_B10, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org