MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.6 nTPM
HPA Brain:39.5 nTPM
GTEx:77.6 nTPM
FANTOM5:113.4 Scaled Tags Per Million
Pig:25.1 nTPM
Mouse:162.0 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.5
2019 Male, age 18, unknown 40.8
2586 Male, age 75, left hemisphere 33.8
2411 Female, age 72, unknown 30.7
2666 Male, age 74, left hemisphere 29.6
1827 Male, age 72, unknown 29.4
2828 Female, age 72, unknown 28.0
2219 Male, age 76, both hemispheres 27.4
1830 Male, age 51, unknown 26.2
1833 Male, age 53, unknown 26.2
1870 Female, age 42, unknown 23.1
Dorsal raphe nucleus
nTPM: 32.6
2298 Female, age 72, unknown 40.7
2047 Male, age 72, unknown 36.8
1828 Male, age 53, unknown 34.7
2750 Male, age 76, both hemispheres 25.7
2016 Female, age 72, unknown 25.4
Inferior colliculus
nTPM: 33.2
2097 Female, age 72, unknown 40.7
1890 Male, age 53, unknown 35.3
1848 Female, age 42, unknown 29.2
2849 Male, age 72, unknown 27.7
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Periaquaductal grey, anterior
nTPM: 32.9
1795 Male, age 51, unknown 38.1
2502 Female, age 75, unknown 34.4
1947 Male, age 18, unknown 26.2
Periaquaductal grey, dorsal
nTPM: 28.2
2850 Male, age 76, both hemispheres 32.0
1831 Male, age 72, unknown 29.5
1840 Male, age 53, unknown 25.7
2464 Female, age 72, unknown 25.5
Periaquaductal grey, lateral
nTPM: 35.4
2272 Male, age 74, both hemispheres 43.6
2053 Male, age 18, unknown 32.0
2140 Male, age 76, both hemispheres 30.6
Pretectal area
nTPM: 34.4
1816 Male, age 51, unknown 44.6
2007 Male, age 72, unknown 39.6
1817 Female, age 42, unknown 39.3
1944 Female, age 72, unknown 37.5
2667 Female, age 75, unknown 35.7
2273 Male, age 74, both hemispheres 35.3
1815 Male, age 53, unknown 33.0
2316 Male, age 76, right hemisphere 32.3
2224 Female, age 72, unknown 31.7
2407 Male, age 75, both hemispheres 24.7
2825 Male, age 18, unknown 24.6
Red nucleus
nTPM: 33.4
2785 Male, age 18, unknown 38.9
1821 Female, age 72, unknown 37.3
2823 Male, age 76, right hemisphere 36.3
2769 Male, age 72, unknown 35.4
1865 Male, age 51, unknown 34.7
1954 Female, age 42, unknown 34.1
2503 Female, age 72, unknown 33.5
2725 Female, age 75, unknown 33.1
1904 Male, age 53, unknown 31.8
2227 Male, age 72, unknown 30.4
2588 Male, age 74, left hemisphere 28.7
2584 Male, age 75, left hemisphere 27.2
Substantia nigra
nTPM: 35.5
1916 Female, age 42, unknown 48.6
1889 Female, age 72, unknown 42.7
1851 Male, age 51, unknown 40.7
1941 Male, age 53, unknown 36.2
2699 Male, age 18, unknown 35.4
2409 Female, age 72, unknown 34.2
2590 Female, age 75, unknown 32.6
2241 Male, age 72, unknown 29.6
2665 Male, age 74, both hemispheres 29.6
2583 Male, age 75, right hemisphere 25.0
Superior colliculus
nTPM: 31.1
2087 Female, age 72, unknown 38.4
1796 Male, age 53, unknown 36.3
2261 Male, age 18, unknown 34.5
1913 Female, age 42, unknown 32.5
2587 Male, age 74, left hemisphere 31.8
1995 Male, age 72, unknown 31.3
2668 Female, age 75, unknown 29.7
1895 Male, age 76, right hemisphere 29.5
2664 Male, age 75, both hemispheres 25.8
1839 Male, age 51, unknown 21.6
Ventral tegmental area
nTPM: 37.3
2410 Female, age 72, unknown 43.8
2218 Male, age 76, both hemispheres 40.4
2223 Female, age 72, unknown 37.6
1915 Female, age 42, unknown 37.0
2021 Male, age 53, unknown 33.9
1942 Male, age 51, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.6
Samples: 139

Max nTPM: 158.7
Min nTPM: 33.1
Std nTPM: 25.2
Median nTPM: 73.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 158.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 155.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 150.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 144.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 130.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 129.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 127.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 126.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 120.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 118.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 112.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.4
FF:10158-103A5 76 years, female 113.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.2
Samples: 4

Max nTPM: 27.9
Min nTPM: 19.6
Sample A Female 27.9
Sample B Female 20.0
Sample C Male 25.3
Sample D Male 19.6
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 26.8
Min nTPM: 21.5
Sample A Female 24.1
Sample B Female 23.6
Sample C Male 26.8
Sample D Male 21.5
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 22.4
Min nTPM: 19.0
Sample B Female 19.5
Sample C Male 22.4
Sample D Male 19.0
Superior colliculi
nTPM: 25.1
Samples: 4

Max nTPM: 27.1
Min nTPM: 22.3
Sample A Female 26.6
Sample B Female 24.4
Sample C Male 27.1
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 162.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 162.0
Samples: 4

Max nTPM: 195.6
Min nTPM: 132.2
Sample A Male 195.6
Sample B Male 147.4
Sample C Female 132.2
Sample D Female 172.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69838286 Antisense, RP_050301_01_C12, Mouse strain C57BL/6J (56 days, male) 2.1

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