MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.2 nTPM
HPA Brain:14.0 nTPM
GTEx:45.2 nTPM
FANTOM5:51.1 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:42.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.6
2411 Female, age 72, unknown 15.4
1870 Female, age 42, unknown 14.8
2019 Male, age 18, unknown 13.6
1830 Male, age 51, unknown 10.7
1827 Male, age 72, unknown 10.6
1833 Male, age 53, unknown 9.8
2586 Male, age 75, left hemisphere 9.3
2828 Female, age 72, unknown 7.8
2219 Male, age 76, both hemispheres 7.2
2666 Male, age 74, left hemisphere 7.0
Dorsal raphe nucleus
nTPM: 12.2
2298 Female, age 72, unknown 16.9
2047 Male, age 72, unknown 11.8
2750 Male, age 76, both hemispheres 11.1
1828 Male, age 53, unknown 11.0
2016 Female, age 72, unknown 10.0
Inferior colliculus
nTPM: 11.2
2097 Female, age 72, unknown 12.9
1848 Female, age 42, unknown 11.6
1890 Male, age 53, unknown 10.2
2849 Male, age 72, unknown 9.8
Median raphe nucleus
nTPM: 10.0
2220 Male, age 76, midline 10.0
Periaquaductal grey, anterior
nTPM: 14.0
1947 Male, age 18, unknown 14.6
2502 Female, age 75, unknown 14.0
1795 Male, age 51, unknown 13.3
Periaquaductal grey, dorsal
nTPM: 10.0
1840 Male, age 53, unknown 11.9
1831 Male, age 72, unknown 9.7
2850 Male, age 76, both hemispheres 9.7
2464 Female, age 72, unknown 8.8
Periaquaductal grey, lateral
nTPM: 9.7
2053 Male, age 18, unknown 13.3
2272 Male, age 74, both hemispheres 9.2
2140 Male, age 76, both hemispheres 6.7
Pretectal area
nTPM: 12.4
1816 Male, age 51, unknown 15.8
1944 Female, age 72, unknown 15.7
2224 Female, age 72, unknown 14.2
2667 Female, age 75, unknown 14.0
1817 Female, age 42, unknown 13.7
2007 Male, age 72, unknown 13.3
1815 Male, age 53, unknown 11.7
2407 Male, age 75, both hemispheres 9.9
2316 Male, age 76, right hemisphere 9.7
2273 Male, age 74, both hemispheres 9.3
2825 Male, age 18, unknown 8.8
Red nucleus
nTPM: 10.3
1954 Female, age 42, unknown 12.9
1821 Female, age 72, unknown 12.0
2503 Female, age 72, unknown 11.5
1904 Male, age 53, unknown 11.4
2725 Female, age 75, unknown 11.4
2588 Male, age 74, left hemisphere 11.2
2823 Male, age 76, right hemisphere 10.5
2769 Male, age 72, unknown 9.8
2785 Male, age 18, unknown 9.6
1865 Male, age 51, unknown 8.4
2227 Male, age 72, unknown 7.6
2584 Male, age 75, left hemisphere 7.3
Substantia nigra
nTPM: 12.9
2241 Male, age 72, unknown 17.5
2409 Female, age 72, unknown 15.9
1851 Male, age 51, unknown 15.6
1916 Female, age 42, unknown 14.8
2583 Male, age 75, right hemisphere 13.8
1889 Female, age 72, unknown 13.5
1941 Male, age 53, unknown 9.9
2699 Male, age 18, unknown 9.8
2590 Female, age 75, unknown 9.2
2665 Male, age 74, both hemispheres 8.9
Superior colliculus
nTPM: 11.5
2087 Female, age 72, unknown 13.1
2587 Male, age 74, left hemisphere 13.1
1796 Male, age 53, unknown 13.0
1895 Male, age 76, right hemisphere 12.7
2668 Female, age 75, unknown 11.9
1995 Male, age 72, unknown 11.6
2261 Male, age 18, unknown 10.9
2664 Male, age 75, both hemispheres 10.7
1839 Male, age 51, unknown 9.7
1913 Female, age 42, unknown 8.0
Ventral tegmental area
nTPM: 11.2
2410 Female, age 72, unknown 12.6
2021 Male, age 53, unknown 11.8
2218 Male, age 76, both hemispheres 11.4
2223 Female, age 72, unknown 11.4
1915 Female, age 42, unknown 10.2
1942 Male, age 51, unknown 9.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.2
Samples: 139

Max nTPM: 75.6
Min nTPM: 29.9
Std nTPM: 8.8
Median nTPM: 43.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 75.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 72.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 70.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 66.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 64.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 61.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 61.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 59.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 59.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.1
FF:10158-103A5 76 years, female 51.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.2
Samples: 4

Max nTPM: 11.9
Min nTPM: 8.5
Sample A Female 11.9
Sample B Female 9.6
Sample C Male 10.9
Sample D Male 8.5
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 10.0
Sample C Male 10.9
Sample D Male 10.6
Periaqueductal gray
nTPM: 9.1
Samples: 3

Max nTPM: 9.7
Min nTPM: 8.2
Sample B Female 9.5
Sample C Male 9.7
Sample D Male 8.2
Superior colliculi
nTPM: 9.7
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.8
Sample A Female 10.1
Sample B Female 9.9
Sample C Male 8.8
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 43.6
Min nTPM: 42.1
Sample A Male 42.8
Sample B Male 43.6
Sample C Female 42.1
Sample D Female 42.3

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