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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.1
nTPM
Monaco:
54.6
nTPM
Schmiedel:
27.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
34.1
HPA sample
nTPM
gdT-cell nTPM: 15.5
Samples: 6
Max nTPM: 29.2
Min nTPM: 4.9
P10809_1007
29.2
P10809_1022
16.8
P10809_1041
4.9
P10809_1060
10.7
P10809_1077
5.9
P10809_1098
25.6
MAIT T-cell nTPM: 32.5
Samples: 6
Max nTPM: 63.8
Min nTPM: 17.5
P10809_1006
25.0
P10809_1024
34.9
P10809_1043
17.5
P10809_1062
25.1
P10809_1083
28.5
P10809_1097
63.8
Memory CD4 T-cell nTPM: 27.2
Samples: 6
Max nTPM: 40.5
Min nTPM: 16.2
P10809_1014
40.5
P10809_1026
26.6
P10809_1045
16.2
P10809_1064
30.5
P10809_1086
23.1
P10809_1113
26.4
Memory CD8 T-cell nTPM: 21.5
Samples: 5
Max nTPM: 30.2
Min nTPM: 8.0
P10809_1012
26.7
P10809_1027
30.2
P10809_1046
8.0
P10809_1065
19.5
P10809_1111
23.2
Naive CD4 T-cell nTPM: 34.1
Samples: 6
Max nTPM: 49.9
Min nTPM: 21.6
P10809_1015
49.9
P10809_1030
28.7
P10809_1049
26.3
P10809_1068
44.7
P10809_1085
21.6
P10809_1112
33.2
Naive CD8 T-cell nTPM: 27.7
Samples: 6
Max nTPM: 47.5
Min nTPM: 13.1
P10809_1016
47.5
P10809_1031
13.1
P10809_1050
14.5
P10809_1069
30.7
P10809_1087
28.6
P10809_1110
31.6
T-reg nTPM: 27.3
Samples: 6
Max nTPM: 58.6
Min nTPM: 10.4
P10809_1018
24.3
P10809_1037
10.4
P10809_1056
16.6
P10809_1075
58.6
P10809_1094
18.2
P10809_1106
35.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
54.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 36.0
Samples: 4
Max nTPM: 56.9
Min nTPM: 15.3
RHH5202_R3573
37.6
RHH5230_R3602
15.3
RHH5259_R3631
34.1
RHH5288_R3660
56.9
Effector memory CD8 T-cell nTPM: 31.2
Samples: 4
Max nTPM: 45.4
Min nTPM: 19.7
RHH5203_R3574
45.4
RHH5231_R3603
19.7
RHH5260_R3632
29.9
RHH5289_R3661
29.8
MAIT T-cell nTPM: 39.7
Samples: 4
Max nTPM: 68.7
Min nTPM: 25.8
RHH5233_R3605
27.2
RHH5205_R3576
25.8
RHH5262_R3634
37.0
RHH5297_R3663
68.7
Memory CD4 T-cell TFH nTPM: 47.9
Samples: 4
Max nTPM: 55.2
Min nTPM: 34.3
RHH5300_R3666
47.3
RHH5236_R3608
55.2
RHH5265_R3637
34.3
RHH5208_R3579
54.7
Memory CD4 T-cell Th1 nTPM: 37.7
Samples: 4
Max nTPM: 43.9
Min nTPM: 31.1
RHH5210_R3581
35.2
RHH5302_R3668
43.9
RHH5238_R3610
31.1
RHH5267_R3639
40.7
Memory CD4 T-cell Th1/Th17 nTPM: 39.1
Samples: 4
Max nTPM: 65.7
Min nTPM: 19.4
RHH5303_R3669
65.7
RHH5211_R3582
47.4
RHH5239_R3611
23.8
RHH5268_R3640
19.4
Memory CD4 T-cell Th17 nTPM: 22.7
Samples: 4
Max nTPM: 52.1
Min nTPM: 9.2
RHH5304_R3670
14.6
RHH5212_R3583
52.1
RHH5240_R3612
14.9
RHH5269_R3641
9.2
Memory CD4 T-cell Th2 nTPM: 46.5
Samples: 4
Max nTPM: 60.8
Min nTPM: 31.8
RHH5305_R3671
60.8
RHH5213_R3584
42.1
RHH5241_R3613
51.3
RHH5270_R3642
31.8
Naive CD4 T-cell nTPM: 54.1
Samples: 4
Max nTPM: 76.1
Min nTPM: 36.2
RHH5306_R3672
55.5
RHH5214_R3585
76.1
RHH5242_R3614
48.4
RHH5271_R3643
36.2
Naive CD8 T-cell nTPM: 36.8
Samples: 4
Max nTPM: 53.6
Min nTPM: 24.4
RHH5201_R3572
44.7
RHH5229_R3601
24.5
RHH5258_R3630
53.6
RHH5287_R3659
24.4
Non-Vd2 gdTCR nTPM: 37.8
Samples: 4
Max nTPM: 52.6
Min nTPM: 27.3
RHH5235_R3607
28.6
RHH5264_R3636
52.6
RHH5207_R3578
27.3
RHH5299_R3665
42.8
T-reg nTPM: 48.7
Samples: 4
Max nTPM: 70.7
Min nTPM: 18.9
RHH5301_R3667
70.2
RHH5237_R3609
70.7
RHH5266_R3638
18.9
RHH5209_R3580
35.1
Terminal effector memory CD4 T-cell nTPM: 17.1
Samples: 2
Max nTPM: 32.3
Min nTPM: 1.8
RHH5243_R3615
1.8
RHH5272_R3644
32.3
Terminal effector memory CD8 T-cell nTPM: 44.2
Samples: 4
Max nTPM: 84.2
Min nTPM: 29.0
RHH5232_R3604
29.4
RHH5204_R3575
84.2
RHH5261_R3633
29.0
RHH5296_R3662
34.2
Vd2 gdTCR nTPM: 54.6
Samples: 4
Max nTPM: 96.5
Min nTPM: 25.9
RHH5234_R3606
25.9
RHH5206_R3577
96.5
RHH5263_R3635
39.1
RHH5298_R3664
56.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
