HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:39.5 nTPM
HPA Brain:27.1 nTPM
GTEx:39.5 nTPM
FANTOM5:68.8 Scaled Tags Per Million
Pig:36.2 nTPM
Mouse:30.5 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004021
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Hippocampus
nTPM: 26.2
2529 Female, age 94, left hemisphere 33.7
2621 Female, age 67, right hemisphere 31.2
1911 Female, age 85, right hemisphere 28.6
2148 Female, age 91, left hemisphere 25.3
1855 Male, age 76, left hemisphere 19.7
1898 Male, age 80, left hemisphere 18.7
Dentate gyrus
nTPM: 23.1
2531 Female, age 67, both hemispheres 34.0
2530 Female, age 94, left hemisphere 27.1
2246 Female, age 85, both hemispheres 22.2
1927 Female, age 91, both hemispheres 22.0
2010 Male, age 76, both hemispheres 19.8
2528 Male, age 74, both hemispheres 13.8
Entorhinal gyrus
nTPM: 27.1
2686 Male, age 75, right hemisphere 43.5
2764 Male, age 80, right hemisphere 28.8
1787 Male, age 76, left hemisphere 27.0
2613 Female, age 94, left hemisphere 26.5
2117 Female, age 91, right hemisphere 20.4
1938 Female, age 85, left hemisphere 16.2
Hippocampus, CA1
nTPM: 17.5
1873 Female, age 85, both hemispheres 23.8
2527 Male, age 74, both hemispheres 19.7
2045 Male, age 76, both hemispheres 19.6
2082 Female, age 91, right hemisphere 15.2
2749 Male, age 80, left hemisphere 9.1
Hippocampus, CA2
nTPM: 19.4
1940 Female, age 85, left hemisphere 23.8
2437 Female, age 94, left hemisphere 22.6
1892 Male, age 76, both hemispheres 21.2
1963 Male, age 80, left hemisphere 17.8
2113 Female, age 91, right hemisphere 17.1
2249 Male, age 74, both hemispheres 14.0
Hippocampus, CA3
nTPM: 24.8
2861 Female, age 67, both hemispheres 46.6
2620 Female, age 94, left hemisphere 32.0
1891 Female, age 85, both hemispheres 22.3
1867 Male, age 76, both hemispheres 21.5
2436 Male, age 74, both hemispheres 13.5
2137 Male, age 80, left hemisphere 12.8
Parahippocampal cortex
nTPM: 27.1
2622 Female, age 67, right hemisphere 48.1
2692 Male, age 74, both hemispheres 32.7
2245 Female, age 91, both hemispheres 30.0
2532 Female, age 72, left hemisphere 28.5
2693 Female, age 94, both hemispheres 26.2
1850 Male, age 80, both hemispheres 23.5
2018 Male, age 76, both hemispheres 23.4
1933 Female, age 85, both hemispheres 22.0
1990 Female, age 91, right hemisphere 21.4
2250 Female, age 67, right hemisphere 15.4
Perirhinal gyrus
nTPM: 22.1
2848 Male, age 76, right hemisphere 24.8
1841 Female, age 85, right hemisphere 24.5
1794 Male, age 80, right hemisphere 22.2
2521 Female, age 94, right hemisphere 19.6
1847 Female, age 91, left hemisphere 19.5
Subiculum
nTPM: 24.1
2438 Female, age 94, left hemisphere 30.1
2042 Male, age 76, both hemispheres 29.9
2619 Male, age 74, both hemispheres 26.1
2729 Female, age 91, right hemisphere 22.3
1901 Male, age 80, both hemispheres 19.9
1977 Female, age 85, both hemispheres 16.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.5
Samples: 197

Max nTPM: 81.8
Min nTPM: 15.9
Std nTPM: 10.6
Median nTPM: 38.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 81.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 72.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 71.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 69.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 67.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 62.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 61.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 59.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 59.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 58.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 58.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.8
FF:10153-102I9 76 years, female 83.7
FF:10169-103B7 60 years, female 54.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.2
Pig sample Sample description nTPM
Subiculum
nTPM: 30.8
Samples: 4

Max nTPM: 35.6
Min nTPM: 28.1
Sample A Female 35.6
Sample B Female 29.9
Sample C Male 29.6
Sample D Male 28.1
Dorsal hippocampus
nTPM: 29.7
Samples: 4

Max nTPM: 31.5
Min nTPM: 27.6
Sample A Female 31.5
Sample B Female 30.2
Sample C Male 29.4
Sample D Male 27.6
Entorhinal cortex
nTPM: 36.3
Samples: 4

Max nTPM: 39.8
Min nTPM: 33.4
Sample A Female 37.9
Sample B Female 33.4
Sample C Male 39.8
Sample D Male 33.9
Ventral hippocampus
nTPM: 31.9
Samples: 4

Max nTPM: 39.4
Min nTPM: 27.0
Sample A Female 28.6
Sample B Female 27.0
Sample C Male 39.4
Sample D Male 32.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.5
Samples: 4

Max nTPM: 34.7
Min nTPM: 26.6
Sample A Male 34.7
Sample B Male 32.4
Sample C Female 28.3
Sample D Female 26.6
Hippocampal formation
nTPM: 21.6
Samples: 4

Max nTPM: 25.4
Min nTPM: 18.0
Sample A Male 25.4
Sample B Male 21.5
Sample C Female 18.0
Sample D Female 21.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69816631 Antisense, RP_050510_01_E05, Mouse strain C57BL/6J (56 days, male) 3.8

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