MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.1 nTPM
HPA Brain:129.0 nTPM
GTEx:51.1 nTPM
FANTOM5:486.0 Scaled Tags Per Million
Pig:61.7 nTPM
Mouse:12.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 109.9
2411 Female, age 72, unknown 129.1
1830 Male, age 51, unknown 128.3
1833 Male, age 53, unknown 120.8
2019 Male, age 18, unknown 119.4
2586 Male, age 75, left hemisphere 118.3
2828 Female, age 72, unknown 106.6
1870 Female, age 42, unknown 106.5
2666 Male, age 74, left hemisphere 103.5
1827 Male, age 72, unknown 83.7
2219 Male, age 76, both hemispheres 83.3
Dorsal raphe nucleus
nTPM: 84.0
2750 Male, age 76, both hemispheres 146.7
1828 Male, age 53, unknown 79.9
2016 Female, age 72, unknown 79.4
2047 Male, age 72, unknown 63.9
2298 Female, age 72, unknown 50.2
Inferior colliculus
nTPM: 73.2
1890 Male, age 53, unknown 80.4
2849 Male, age 72, unknown 77.2
1848 Female, age 42, unknown 75.2
2097 Female, age 72, unknown 59.9
Median raphe nucleus
nTPM: 65.8
2220 Male, age 76, midline 65.8
Periaquaductal grey, anterior
nTPM: 81.1
2502 Female, age 75, unknown 95.2
1947 Male, age 18, unknown 76.1
1795 Male, age 51, unknown 72.0
Periaquaductal grey, dorsal
nTPM: 58.6
2464 Female, age 72, unknown 89.5
1831 Male, age 72, unknown 61.0
1840 Male, age 53, unknown 49.1
2850 Male, age 76, both hemispheres 34.6
Periaquaductal grey, lateral
nTPM: 62.4
2053 Male, age 18, unknown 75.5
2272 Male, age 74, both hemispheres 68.8
2140 Male, age 76, both hemispheres 43.0
Pretectal area
nTPM: 76.7
2316 Male, age 76, right hemisphere 115.9
2407 Male, age 75, both hemispheres 101.0
1815 Male, age 53, unknown 94.7
2825 Male, age 18, unknown 82.7
2007 Male, age 72, unknown 78.6
1817 Female, age 42, unknown 76.2
2224 Female, age 72, unknown 61.6
2667 Female, age 75, unknown 61.4
1944 Female, age 72, unknown 58.3
1816 Male, age 51, unknown 57.8
2273 Male, age 74, both hemispheres 55.4
Red nucleus
nTPM: 129.0
2823 Male, age 76, right hemisphere 176.1
1865 Male, age 51, unknown 141.6
2588 Male, age 74, left hemisphere 141.5
1904 Male, age 53, unknown 135.8
2769 Male, age 72, unknown 132.9
2227 Male, age 72, unknown 131.7
2584 Male, age 75, left hemisphere 129.4
2785 Male, age 18, unknown 127.5
2503 Female, age 72, unknown 123.0
1821 Female, age 72, unknown 117.1
1954 Female, age 42, unknown 107.6
2725 Female, age 75, unknown 84.0
Substantia nigra
nTPM: 90.1
2583 Male, age 75, right hemisphere 110.6
2590 Female, age 75, unknown 106.7
1851 Male, age 51, unknown 100.8
2409 Female, age 72, unknown 99.1
2241 Male, age 72, unknown 87.5
2699 Male, age 18, unknown 86.8
2665 Male, age 74, both hemispheres 83.8
1889 Female, age 72, unknown 82.6
1941 Male, age 53, unknown 71.8
1916 Female, age 42, unknown 71.3
Superior colliculus
nTPM: 93.2
1895 Male, age 76, right hemisphere 119.2
1913 Female, age 42, unknown 118.3
2668 Female, age 75, unknown 117.8
1995 Male, age 72, unknown 110.7
1839 Male, age 51, unknown 94.2
2587 Male, age 74, left hemisphere 87.5
2664 Male, age 75, both hemispheres 81.2
1796 Male, age 53, unknown 73.9
2261 Male, age 18, unknown 64.9
2087 Female, age 72, unknown 64.5
Ventral tegmental area
nTPM: 97.6
2410 Female, age 72, unknown 122.8
2223 Female, age 72, unknown 113.2
2021 Male, age 53, unknown 97.5
1942 Male, age 51, unknown 90.0
2218 Male, age 76, both hemispheres 81.4
1915 Female, age 42, unknown 80.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.1
Samples: 139

Max nTPM: 127.5
Min nTPM: 19.8
Std nTPM: 19.5
Median nTPM: 47.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 127.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 125.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 111.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 106.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 102.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 100.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 92.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 90.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 89.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 88.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 83.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 486.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 486.0
FF:10158-103A5 76 years, female 486.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.7
Samples: 4

Max nTPM: 94.7
Min nTPM: 44.3
Sample A Female 48.8
Sample B Female 44.3
Sample C Male 58.8
Sample D Male 94.7
Midbrain
nTPM: 56.9
Samples: 4

Max nTPM: 68.2
Min nTPM: 49.0
Sample A Female 68.2
Sample B Female 60.1
Sample C Male 50.2
Sample D Male 49.0
Periaqueductal gray
nTPM: 43.7
Samples: 3

Max nTPM: 49.2
Min nTPM: 37.9
Sample B Female 49.2
Sample C Male 37.9
Sample D Male 44.0
Superior colliculi
nTPM: 48.3
Samples: 4

Max nTPM: 67.0
Min nTPM: 27.8
Sample A Female 45.5
Sample B Female 27.8
Sample C Male 52.9
Sample D Male 67.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.4
Sample A Male 14.4
Sample B Male 11.4
Sample C Female 11.4
Sample D Female 12.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
74431685 Antisense, RP_060207_02_D02, Mouse strain C57BL/6J (56 days, male) 0.4

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