HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:12.7 nTPM
HPA Brain:2.5 nTPM
GTEx:12.7 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:67.9 nTPM
Allen mouse:8.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019911
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 2.5
Sample id Sample description nTPM
Hippocampus
nTPM: 1.5
2148 Female, age 91, left hemisphere 2.5
2621 Female, age 67, right hemisphere 1.8
1911 Female, age 85, right hemisphere 1.5
1855 Male, age 76, left hemisphere 1.3
1898 Male, age 80, left hemisphere 1.1
2529 Female, age 94, left hemisphere 1.0
Dentate gyrus
nTPM: 2.4
2531 Female, age 67, both hemispheres 4.2
2246 Female, age 85, both hemispheres 2.6
1927 Female, age 91, both hemispheres 2.3
2010 Male, age 76, both hemispheres 2.1
2528 Male, age 74, both hemispheres 2.0
2530 Female, age 94, left hemisphere 1.2
Entorhinal gyrus
nTPM: 1.5
2686 Male, age 75, right hemisphere 2.0
2613 Female, age 94, left hemisphere 1.9
1787 Male, age 76, left hemisphere 1.4
2764 Male, age 80, right hemisphere 1.4
1938 Female, age 85, left hemisphere 1.2
2117 Female, age 91, right hemisphere 1.2
Hippocampus, CA1
nTPM: 2.1
2045 Male, age 76, both hemispheres 2.8
2082 Female, age 91, right hemisphere 2.3
1873 Female, age 85, both hemispheres 2.0
2749 Male, age 80, left hemisphere 1.9
2527 Male, age 74, both hemispheres 1.3
Hippocampus, CA2
nTPM: 1.6
1940 Female, age 85, left hemisphere 2.1
2113 Female, age 91, right hemisphere 2.1
2249 Male, age 74, both hemispheres 2.1
1892 Male, age 76, both hemispheres 1.2
1963 Male, age 80, left hemisphere 1.1
2437 Female, age 94, left hemisphere 0.7
Hippocampus, CA3
nTPM: 2.5
2620 Female, age 94, left hemisphere 4.3
2861 Female, age 67, both hemispheres 3.0
2137 Male, age 80, left hemisphere 2.3
1867 Male, age 76, both hemispheres 2.2
1891 Female, age 85, both hemispheres 1.7
2436 Male, age 74, both hemispheres 1.5
Parahippocampal cortex
nTPM: 1.8
2693 Female, age 94, both hemispheres 2.5
2622 Female, age 67, right hemisphere 2.4
1933 Female, age 85, both hemispheres 2.0
2250 Female, age 67, right hemisphere 2.0
1850 Male, age 80, both hemispheres 1.8
2532 Female, age 72, left hemisphere 1.8
2245 Female, age 91, both hemispheres 1.7
2692 Male, age 74, both hemispheres 1.7
1990 Female, age 91, right hemisphere 1.3
2018 Male, age 76, both hemispheres 1.3
Perirhinal gyrus
nTPM: 2.4
2521 Female, age 94, right hemisphere 3.9
1841 Female, age 85, right hemisphere 2.8
2848 Male, age 76, right hemisphere 2.0
1794 Male, age 80, right hemisphere 1.9
1847 Female, age 91, left hemisphere 1.5
Subiculum
nTPM: 1.2
2729 Female, age 91, right hemisphere 2.5
2042 Male, age 76, both hemispheres 1.5
2619 Male, age 74, both hemispheres 1.1
1901 Male, age 80, both hemispheres 1.0
1977 Female, age 85, both hemispheres 1.0
2438 Female, age 94, left hemisphere 0.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.7
Samples: 197

Max nTPM: 49.7
Min nTPM: 4.1
Std nTPM: 5.6
Median nTPM: 11.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 49.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 33.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 30.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 30.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 28.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 27.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 27.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 23.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 23.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 23.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 22.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.1
FF:10153-102I9 76 years, female 19.8
FF:10169-103B7 60 years, female 12.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Subiculum
nTPM: 12.6
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.1
Sample A Female 13.9
Sample B Female 12.2
Sample C Male 11.1
Sample D Male 13.2
Dorsal hippocampus
nTPM: 14.2
Samples: 4

Max nTPM: 18.3
Min nTPM: 12.0
Sample A Female 12.5
Sample B Female 13.8
Sample C Male 12.0
Sample D Male 18.3
Entorhinal cortex
nTPM: 16.2
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.5
Sample A Female 19.2
Sample B Female 14.5
Sample C Male 15.7
Sample D Male 15.3
Ventral hippocampus
nTPM: 11.7
Samples: 4

Max nTPM: 12.7
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 12.0
Sample C Male 12.7
Sample D Male 11.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 67.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 67.9
Samples: 4

Max nTPM: 93.6
Min nTPM: 50.9
Sample A Male 62.2
Sample B Male 93.6
Sample C Female 50.9
Sample D Female 65.0
Hippocampal formation
nTPM: 39.8
Samples: 4

Max nTPM: 42.7
Min nTPM: 35.8
Sample A Male 42.7
Sample B Male 35.8
Sample C Female 40.4
Sample D Female 40.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.5
74003405 Antisense, RP_050725_01_B07, Mouse strain C57BL/6J (56 days, male) 8.5
70927831 Antisense, RP_050725_01_B07, Mouse strain C57BL/6J (56 days, male) 5.6

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