MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.0 nTPM
HPA Brain:42.8 nTPM
GTEx:3.0 nTPM
FANTOM5:21.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2219 Male, age 76, both hemispheres 71.5
1827 Male, age 72, unknown 38.5
2828 Female, age 72, unknown 31.5
1833 Male, age 53, unknown 31.1
2411 Female, age 72, unknown 29.9
1870 Female, age 42, unknown 29.0
2019 Male, age 18, unknown 27.1
1830 Male, age 51, unknown 25.8
2666 Male, age 74, left hemisphere 21.4
2586 Male, age 75, left hemisphere 15.2
Dorsal raphe nucleus
nTPM: 32.0
2298 Female, age 72, unknown 51.2
2750 Male, age 76, both hemispheres 33.0
2047 Male, age 72, unknown 27.6
1828 Male, age 53, unknown 24.2
2016 Female, age 72, unknown 23.9
Inferior colliculus
nTPM: 39.7
2097 Female, age 72, unknown 53.1
1890 Male, age 53, unknown 37.5
2849 Male, age 72, unknown 34.4
1848 Female, age 42, unknown 33.8
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 35.4
2502 Female, age 75, unknown 36.9
1795 Male, age 51, unknown 36.4
1947 Male, age 18, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 29.9
1831 Male, age 72, unknown 40.6
2850 Male, age 76, both hemispheres 28.5
1840 Male, age 53, unknown 28.4
2464 Female, age 72, unknown 22.2
Periaquaductal grey, lateral
nTPM: 42.8
2272 Male, age 74, both hemispheres 60.8
2053 Male, age 18, unknown 39.6
2140 Male, age 76, both hemispheres 28.0
Pretectal area
nTPM: 39.7
1816 Male, age 51, unknown 59.5
2273 Male, age 74, both hemispheres 48.4
1944 Female, age 72, unknown 44.1
2224 Female, age 72, unknown 42.5
2316 Male, age 76, right hemisphere 38.5
1815 Male, age 53, unknown 36.4
1817 Female, age 42, unknown 35.2
2007 Male, age 72, unknown 35.1
2667 Female, age 75, unknown 34.3
2407 Male, age 75, both hemispheres 32.6
2825 Male, age 18, unknown 29.9
Red nucleus
nTPM: 29.8
2725 Female, age 75, unknown 38.0
1904 Male, age 53, unknown 35.0
2584 Male, age 75, left hemisphere 34.5
2823 Male, age 76, right hemisphere 33.4
2503 Female, age 72, unknown 32.1
1865 Male, age 51, unknown 29.4
2769 Male, age 72, unknown 28.8
2785 Male, age 18, unknown 28.6
2227 Male, age 72, unknown 27.7
1821 Female, age 72, unknown 26.5
1954 Female, age 42, unknown 26.3
2588 Male, age 74, left hemisphere 17.6
Substantia nigra
nTPM: 29.8
2665 Male, age 74, both hemispheres 37.8
2590 Female, age 75, unknown 35.5
2699 Male, age 18, unknown 35.3
1889 Female, age 72, unknown 35.2
2583 Male, age 75, right hemisphere 32.2
1916 Female, age 42, unknown 29.0
1941 Male, age 53, unknown 28.1
2241 Male, age 72, unknown 24.8
1851 Male, age 51, unknown 24.5
2409 Female, age 72, unknown 15.2
Superior colliculus
nTPM: 37.7
2261 Male, age 18, unknown 48.7
1796 Male, age 53, unknown 47.1
2087 Female, age 72, unknown 47.1
2587 Male, age 74, left hemisphere 42.8
1913 Female, age 42, unknown 39.8
1895 Male, age 76, right hemisphere 36.3
1995 Male, age 72, unknown 35.9
1839 Male, age 51, unknown 28.6
2664 Male, age 75, both hemispheres 25.4
2668 Female, age 75, unknown 25.1
Ventral tegmental area
nTPM: 35.2
2223 Female, age 72, unknown 41.4
1942 Male, age 51, unknown 38.6
2410 Female, age 72, unknown 33.6
2021 Male, age 53, unknown 32.8
1915 Female, age 42, unknown 32.6
2218 Male, age 76, both hemispheres 32.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.0
Samples: 139

Max nTPM: 14.0
Min nTPM: 0.4
Std nTPM: 2.2
Median nTPM: 2.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 10.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 9.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 9.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 9.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 8.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 7.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 7.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 7.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 6.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

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