MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.2 nTPM
HPA Brain:257.2 nTPM
GTEx:83.2 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:753.9 nTPM
Mouse:300.3 nTPM
Allen mouse:13.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 257.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 190.5
2019 Male, age 18, unknown 431.4
2219 Male, age 76, both hemispheres 239.1
2666 Male, age 74, left hemisphere 191.6
2411 Female, age 72, unknown 180.8
1827 Male, age 72, unknown 176.0
1870 Female, age 42, unknown 156.3
2586 Male, age 75, left hemisphere 144.7
2828 Female, age 72, unknown 130.9
1830 Male, age 51, unknown 129.7
1833 Male, age 53, unknown 125.0
Dorsal raphe nucleus
nTPM: 238.0
1828 Male, age 53, unknown 439.6
2047 Male, age 72, unknown 261.8
2750 Male, age 76, both hemispheres 189.8
2298 Female, age 72, unknown 181.5
2016 Female, age 72, unknown 117.3
Inferior colliculus
nTPM: 173.7
2097 Female, age 72, unknown 200.6
1890 Male, age 53, unknown 190.1
1848 Female, age 42, unknown 187.6
2849 Male, age 72, unknown 116.4
Median raphe nucleus
nTPM: 198.1
2220 Male, age 76, midline 198.1
Periaquaductal grey, anterior
nTPM: 171.7
2502 Female, age 75, unknown 201.7
1795 Male, age 51, unknown 189.1
1947 Male, age 18, unknown 124.3
Periaquaductal grey, dorsal
nTPM: 119.3
1831 Male, age 72, unknown 157.8
2464 Female, age 72, unknown 134.8
2850 Male, age 76, both hemispheres 98.8
1840 Male, age 53, unknown 85.7
Periaquaductal grey, lateral
nTPM: 94.9
2053 Male, age 18, unknown 104.2
2272 Male, age 74, both hemispheres 97.9
2140 Male, age 76, both hemispheres 82.6
Pretectal area
nTPM: 257.2
1944 Female, age 72, unknown 500.2
1817 Female, age 42, unknown 453.2
1816 Male, age 51, unknown 407.0
2007 Male, age 72, unknown 388.7
2667 Female, age 75, unknown 296.4
1815 Male, age 53, unknown 229.8
2316 Male, age 76, right hemisphere 134.6
2224 Female, age 72, unknown 129.5
2825 Male, age 18, unknown 111.6
2407 Male, age 75, both hemispheres 95.4
2273 Male, age 74, both hemispheres 82.3
Red nucleus
nTPM: 247.3
1821 Female, age 72, unknown 421.9
2785 Male, age 18, unknown 338.1
2503 Female, age 72, unknown 292.9
1954 Female, age 42, unknown 276.8
2823 Male, age 76, right hemisphere 273.4
1865 Male, age 51, unknown 244.2
2588 Male, age 74, left hemisphere 230.4
2227 Male, age 72, unknown 216.1
2769 Male, age 72, unknown 213.0
1904 Male, age 53, unknown 201.2
2584 Male, age 75, left hemisphere 150.2
2725 Female, age 75, unknown 109.1
Substantia nigra
nTPM: 236.5
1941 Male, age 53, unknown 397.5
1889 Female, age 72, unknown 358.5
1916 Female, age 42, unknown 316.2
2665 Male, age 74, both hemispheres 298.2
1851 Male, age 51, unknown 232.8
2409 Female, age 72, unknown 215.3
2241 Male, age 72, unknown 191.8
2699 Male, age 18, unknown 140.5
2590 Female, age 75, unknown 108.2
2583 Male, age 75, right hemisphere 106.4
Superior colliculus
nTPM: 200.5
2668 Female, age 75, unknown 446.0
2087 Female, age 72, unknown 342.1
1895 Male, age 76, right hemisphere 259.9
2261 Male, age 18, unknown 177.8
1913 Female, age 42, unknown 172.6
1796 Male, age 53, unknown 156.2
1839 Male, age 51, unknown 134.5
1995 Male, age 72, unknown 113.7
2664 Male, age 75, both hemispheres 104.7
2587 Male, age 74, left hemisphere 97.3
Ventral tegmental area
nTPM: 211.4
2218 Male, age 76, both hemispheres 304.3
2410 Female, age 72, unknown 276.6
1915 Female, age 42, unknown 226.3
2223 Female, age 72, unknown 206.7
1942 Male, age 51, unknown 145.7
2021 Male, age 53, unknown 108.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.2
Samples: 139

Max nTPM: 816.5
Min nTPM: 0.5
Std nTPM: 127.9
Median nTPM: 28.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 816.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 762.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 399.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 372.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 356.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 346.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 320.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 289.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 285.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 282.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 270.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 753.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 381.9
Samples: 4

Max nTPM: 853.7
Min nTPM: 161.7
Sample A Female 853.7
Sample B Female 161.7
Sample C Male 277.1
Sample D Male 234.9
Midbrain
nTPM: 427.5
Samples: 4

Max nTPM: 657.4
Min nTPM: 80.8
Sample A Female 80.8
Sample B Female 412.7
Sample C Male 657.4
Sample D Male 559.0
Periaqueductal gray
nTPM: 272.4
Samples: 3

Max nTPM: 362.1
Min nTPM: 174.6
Sample B Female 362.1
Sample C Male 280.6
Sample D Male 174.6
Superior colliculi
nTPM: 753.9
Samples: 4

Max nTPM: 1192.9
Min nTPM: 380.4
Sample A Female 765.0
Sample B Female 380.4
Sample C Male 1192.9
Sample D Male 677.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 300.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 300.3
Samples: 4

Max nTPM: 309.9
Min nTPM: 291.3
Sample A Male 292.0
Sample B Male 309.9
Sample C Female 307.9
Sample D Female 291.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.1
73512198 Antisense, RP_050712_04_B04, Mouse strain C57BL/6J (56 days, male) 13.1
70919083 Antisense, RP_050712_04_B04, Mouse strain C57BL/6J (56 days, male) 8.2

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