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                                  BRAIN SPINAL CORD Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
                                  MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Brain proteome
                                  SPINAL CORD - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  Consensus:119.4 nTPM
                                  HPA Brain:69.0 nTPM
                                  GTEx:119.4 nTPM
                                  FANTOM5:64.6 Scaled Tags Per Million

                                  SPINAL CORD - HPA Brain RNA-seq
                                  Max nTPM 69.0
                                  Sample id Sample description nTPM
                                  Cervical spinal cord, central gray
                                  nTPM: 62.1
                                  2194 Female, age 79, both hemispheres 73.7
                                  2816 Male, age 47, midline 69.5
                                  1981 Female, age 72, midline 62.9
                                  2048 Male, age 55, midline 52.4
                                  2565 Male, age 75, midline 52.0
                                  Cervical spinal cord, dorsal horn
                                  nTPM: 68.9
                                  2296 Male, age 66, both hemispheres 108.1
                                  2173 Female, age 72, unknown 87.7
                                  1877 Male, age 55, unknown 59.6
                                  2069 Male, age 47, both hemispheres 59.0
                                  2297 Male, age 75, both hemispheres 52.1
                                  2721 Male, age 90, both hemispheres 47.0
                                  Cervical spinal cord, ventral horn
                                  nTPM: 69.0
                                  2068 Male, age 55, unknown 86.5
                                  2820 Female, age 79, both hemispheres 81.0
                                  2480 Male, age 75, both hemispheres 70.9
                                  2295 Male, age 66, both hemispheres 63.0
                                  2809 Male, age 90, both hemispheres 62.9
                                  2098 Female, age 72, unknown 49.6

                                  SPINAL CORD - GTEx RNA-seqi

                                  RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                  Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 119.4
                                  GTEx sample id Sample description nTPM
                                  86.6110.1155.715.9254.9020406080100120140160180200220240260
                                  86.6110.1155.715.9254.9020406080100120140160180200220240260
                                  Brain - Spinal cord (cervical c-1)
                                  Average nTPM: 119.4
                                  Samples: 159

                                  Max nTPM: 266.5
                                  Min nTPM: 15.9
                                  Std nTPM: 50.2
                                  Median nTPM: 110.1
                                  GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 266.5
                                  GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 254.9
                                  GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 253.6
                                  GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 251.9
                                  GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 238.7
                                  GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 232.1
                                  GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 223.7
                                  GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 217.5
                                  GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 214.8
                                  GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 196.8
                                  GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 192.5
                                  GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 184.6
                                  GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 184.5
                                  GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 184.4
                                  GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 183.9
                                  GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 183.5
                                  GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 183.3
                                  GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 182.4
                                  GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 182.0
                                  GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 179.9
                                  GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 179.6
                                  GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 177.8
                                  GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 176.9
                                  GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 176.4
                                  GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 176.2
                                  GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 173.0
                                  GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 171.1
                                  GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 169.5
                                  GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 168.8
                                  GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 168.0
                                  GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 166.6
                                  GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 166.4
                                  GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 164.9
                                  GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 163.0
                                  GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 162.1
                                  GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 161.9
                                  GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 161.1
                                  GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 158.7
                                  GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 157.2
                                  GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 156.3
                                  GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 155.1
                                  GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 153.3
                                  GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 149.6
                                  GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 147.7
                                  GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 143.1
                                  GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 142.8
                                  GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 140.5
                                  GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 139.4
                                  GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 135.8
                                  GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 135.3
                                  GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 134.9
                                  GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 134.3
                                  GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 132.5
                                  GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 132.0
                                  GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 131.5
                                  GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 129.9
                                  GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 129.7
                                  GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 129.0
                                  GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.8
                                  GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 126.9
                                  GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 126.6
                                  GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 125.1
                                  GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 125.0
                                  GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 123.9
                                  GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 123.6
                                  GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 123.1
                                  GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 123.0
                                  GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 121.2
                                  GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 121.1
                                  GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 120.2
                                  GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 118.2
                                  GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 117.8
                                  GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 117.6
                                  GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 117.1
                                  GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 117.0
                                  GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 115.5
                                  GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 115.1
                                  GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 112.8
                                  GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 112.1
                                  GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 110.1
                                  GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 110.1
                                  GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 109.8
                                  GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 108.5
                                  GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 108.0
                                  GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 107.9
                                  GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 107.1
                                  GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 106.9
                                  GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 106.4
                                  GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 106.2
                                  GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 105.8
                                  GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 105.5
                                  GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 105.0
                                  GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 104.1
                                  GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 102.9
                                  GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 102.5
                                  GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 102.3
                                  GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 100.6
                                  GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 100.0
                                  GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 99.9
                                  GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 99.8
                                  GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 97.3
                                  GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 95.5
                                  GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 94.5
                                  GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 93.0
                                  GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 93.0
                                  GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 92.5
                                  GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 91.8
                                  GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 91.7
                                  GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 91.7
                                  GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 91.7
                                  GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 91.6
                                  GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 91.2
                                  GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 91.2
                                  GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 91.0
                                  GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 89.4
                                  GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 89.3
                                  GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 89.0
                                  GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 88.9
                                  GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 87.3
                                  GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 85.9
                                  GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 84.1
                                  GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 83.3
                                  GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 83.1
                                  GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 82.9
                                  GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 79.8
                                  GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 79.2
                                  GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 78.9
                                  GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 78.3
                                  GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 78.3
                                  GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 77.3
                                  GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 73.5
                                  GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 72.2
                                  GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 71.3
                                  GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 70.7
                                  GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 70.0
                                  GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 69.8
                                  GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 68.2
                                  GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 64.6
                                  GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.9
                                  GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 63.7
                                  GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 61.3
                                  GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 60.7
                                  GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 58.6
                                  GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 58.5
                                  GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 56.7
                                  GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 54.9
                                  GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 51.5
                                  GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 51.0
                                  GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 50.4
                                  GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 45.0
                                  GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 43.6
                                  GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 42.9
                                  GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 42.9
                                  GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 41.6
                                  GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 40.3
                                  GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 37.0
                                  GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 36.2
                                  GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 32.7
                                  GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 15.9
                                  Show allShow less

                                  SPINAL CORD - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 64.6
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Spinal cord
                                  Scaled Tags Per Million: 64.6
                                  FF:10181-103D1 60 years, female 69.3
                                  FF:10159-103A6 76 years, female 59.8

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