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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
2.8
nTPM
FANTOM5:
29.0
Scaled Tags Per Million
Pig:
23.9
nTPM
Mouse:
12.9
nTPM
Allen mouse:
8.3
Expression energy
CAUDATE - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA026552
Antibody HPA026557
Glial cells
Low
Medium
Neuronal cells
Not detected
Medium
BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM
2.8
Sample id
Sample description
nTPM
Caudate nucleus nTPM: 2.3
2288
Male, age 75, left hemisphere
2.5
2289
Male, age 61, right hemisphere
2.5
2846
Female, age 79, unknown
2.5
2290
Female, age 72, unknown
2.4
1854
Male, age 80, left hemisphere
2.3
2481
Female, age 94, left hemisphere
2.3
1857
Female, age 85, left hemisphere
2.1
1781
Male, age 74, unknown
2.0
Globus pallidus, externus nTPM: 2.2
2567
Female, age 72, unknown
2.7
2395
Male, age 75, both hemispheres
2.3
2646
Male, age 61, right hemisphere
2.2
2772
Female, age 79, unknown
1.9
1996
Male, age 80, right hemisphere
1.7
Globus pallidus, internus nTPM: 2.0
2566
Female, age 72, unknown
2.5
2778
Female, age 91, both hemispheres
2.3
2287
Male, age 75, right hemisphere
2.2
2111
Female, age 85, right hemisphere
2.0
2037
Male, age 80, right hemisphere
1.9
1818
Male, age 74, unknown
1.8
2483
Female, age 94, right hemisphere
1.6
Nucleus accumbens nTPM: 2.3
2391
Female, age 94, left hemisphere
2.7
2824
Male, age 61, right hemisphere
2.6
2732
Male, age 80, right hemisphere
2.3
1856
Female, age 91, right hemisphere
2.2
2286
Male, age 75, left hemisphere
2.1
2698
Female, age 72, unknown
2.1
1806
Female, age 85, left hemisphere
2.0
1783
Male, age 74, unknown
1.9
Nucleus basalis of Meynert nTPM: 2.4
2393
Male, age 80, right hemisphere
2.7
2484
Female, age 94, left hemisphere
2.4
2821
Male, age 75, both hemispheres
2.3
2569
Male, age 61, both hemispheres
2.1
Nucleus of the diagonal band nTPM: 2.1
1979
Male, age 74, unknown
2.3
2029
Male, age 61, right hemisphere
2.3
2775
Male, age 80, right hemisphere
2.2
2195
Female, age 85, both hemispheres
2.1
1812
Female, age 91, both hemispheres
1.7
Putamen nTPM: 2.3
2466
Female, age 79, unknown
2.8
1829
Male, age 74, unknown
2.6
1937
Female, age 91, right hemisphere
2.4
1838
Male, age 80, right hemisphere
2.2
2482
Female, age 94, left hemisphere
2.2
2489
Female, age 72, unknown
1.9
2647
Male, age 75, left hemisphere
1.9
Septal nuclei nTPM: 2.3
2199
Male, age 80, right hemisphere
2.8
2394
Male, age 61, left hemisphere
2.5
2059
Female, age 85, both hemispheres
2.3
2629
Female, age 94, right hemisphere
2.2
2031
Female, age 72, unknown
2.1
1960
Male, age 74, unknown
2.0
2009
Female, age 91, both hemispheres
2.0
Stria terminalis, bed nucleus nTPM: 2.8
2201
Male, age 74, unknown
3.5
2486
Female, age 94, both hemispheres
2.8
1974
Female, age 91, both hemispheres
2.2
BASAL GANGLIA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
12.9
Mouse sample
Sample description
nTPM
Caudate putamen nTPM: 12.9
Samples: 4
Max nTPM: 14.1
Min nTPM: 11.3
Sample A
Male
14.1
Sample B
Male
12.1
Sample C
Female
13.9
Sample D
Female
11.3
Septum nTPM: 11.2
Samples: 4
Max nTPM: 12.8
Min nTPM: 9.3
Sample A
Male
12.8
Sample B
Male
12.4
Sample C
Female
9.3
Sample D
Female
10.3
Ventral forebrain nTPM: 12.5
Samples: 4
Max nTPM: 13.9
Min nTPM: 10.6
Sample A
Male
13.4
Sample B
Male
12.0
Sample C
Female
13.9
Sample D
Female
10.6
BASAL GANGLIA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
