MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:36.8 nTPM
FANTOM5:1003.4 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.0
2411 Female, age 72, unknown 46.5
2019 Male, age 18, unknown 43.4
1870 Female, age 42, unknown 38.4
1830 Male, age 51, unknown 36.2
2219 Male, age 76, both hemispheres 32.7
2828 Female, age 72, unknown 32.0
1833 Male, age 53, unknown 30.6
1827 Male, age 72, unknown 28.7
2666 Male, age 74, left hemisphere 21.6
2586 Male, age 75, left hemisphere 20.0
Dorsal raphe nucleus
nTPM: 34.2
2750 Male, age 76, both hemispheres 53.1
2016 Female, age 72, unknown 38.1
1828 Male, age 53, unknown 27.6
2298 Female, age 72, unknown 26.2
2047 Male, age 72, unknown 26.0
Inferior colliculus
nTPM: 27.3
1890 Male, age 53, unknown 29.2
1848 Female, age 42, unknown 28.4
2097 Female, age 72, unknown 26.5
2849 Male, age 72, unknown 25.0
Median raphe nucleus
nTPM: 26.2
2220 Male, age 76, midline 26.2
Periaquaductal grey, anterior
nTPM: 29.1
1947 Male, age 18, unknown 31.8
2502 Female, age 75, unknown 30.7
1795 Male, age 51, unknown 24.9
Periaquaductal grey, dorsal
nTPM: 25.2
2464 Female, age 72, unknown 33.0
1831 Male, age 72, unknown 26.1
1840 Male, age 53, unknown 23.3
2850 Male, age 76, both hemispheres 18.3
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 39.0
2053 Male, age 18, unknown 34.1
2140 Male, age 76, both hemispheres 20.4
Pretectal area
nTPM: 28.9
2273 Male, age 74, both hemispheres 43.7
2316 Male, age 76, right hemisphere 34.1
2407 Male, age 75, both hemispheres 34.1
2224 Female, age 72, unknown 28.8
2007 Male, age 72, unknown 27.9
1944 Female, age 72, unknown 27.8
2825 Male, age 18, unknown 27.0
2667 Female, age 75, unknown 25.9
1815 Male, age 53, unknown 25.0
1817 Female, age 42, unknown 22.4
1816 Male, age 51, unknown 21.7
Red nucleus
nTPM: 36.8
1865 Male, age 51, unknown 44.1
2823 Male, age 76, right hemisphere 43.7
1904 Male, age 53, unknown 41.9
2503 Female, age 72, unknown 39.0
2769 Male, age 72, unknown 38.9
2725 Female, age 75, unknown 37.8
1954 Female, age 42, unknown 37.2
2227 Male, age 72, unknown 36.4
2785 Male, age 18, unknown 35.9
1821 Female, age 72, unknown 29.7
2588 Male, age 74, left hemisphere 29.4
2584 Male, age 75, left hemisphere 27.4
Substantia nigra
nTPM: 29.0
2409 Female, age 72, unknown 42.0
1851 Male, age 51, unknown 32.5
2583 Male, age 75, right hemisphere 31.0
2590 Female, age 75, unknown 30.1
1889 Female, age 72, unknown 29.8
1941 Male, age 53, unknown 27.1
2241 Male, age 72, unknown 27.0
1916 Female, age 42, unknown 26.1
2699 Male, age 18, unknown 25.9
2665 Male, age 74, both hemispheres 18.2
Superior colliculus
nTPM: 32.1
1995 Male, age 72, unknown 45.4
1913 Female, age 42, unknown 43.8
1895 Male, age 76, right hemisphere 34.9
1796 Male, age 53, unknown 33.4
2087 Female, age 72, unknown 32.0
1839 Male, age 51, unknown 30.2
2587 Male, age 74, left hemisphere 30.2
2668 Female, age 75, unknown 29.5
2261 Male, age 18, unknown 21.5
2664 Male, age 75, both hemispheres 20.3
Ventral tegmental area
nTPM: 34.6
2021 Male, age 53, unknown 40.7
2410 Female, age 72, unknown 37.8
2223 Female, age 72, unknown 36.5
1942 Male, age 51, unknown 34.2
2218 Male, age 76, both hemispheres 29.4
1915 Female, age 42, unknown 28.9

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1003.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1003.4
FF:10158-103A5 76 years, female 1003.4

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