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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
342.9
nTPM
FANTOM5:
155.2
Scaled Tags Per Million
Pig:
221.6
nTPM
Mouse:
2.5
nTPM
Allen mouse:
19.7
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
342.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 190.1
2586
Male, age 75, left hemisphere
312.5
1870
Female, age 42, unknown
276.8
1827
Male, age 72, unknown
230.5
2828
Female, age 72, unknown
211.3
2411
Female, age 72, unknown
195.2
1833
Male, age 53, unknown
185.4
2666
Male, age 74, left hemisphere
180.7
1830
Male, age 51, unknown
160.4
2219
Male, age 76, both hemispheres
111.2
2019
Male, age 18, unknown
36.7
Dorsal raphe nucleus nTPM: 254.4
2298
Female, age 72, unknown
347.4
2047
Male, age 72, unknown
295.0
2016
Female, age 72, unknown
250.4
2750
Male, age 76, both hemispheres
196.3
1828
Male, age 53, unknown
182.8
Inferior colliculus nTPM: 222.1
2849
Male, age 72, unknown
269.3
1848
Female, age 42, unknown
235.1
2097
Female, age 72, unknown
224.9
1890
Male, age 53, unknown
159.3
Median raphe nucleus nTPM: 246.4
2220
Male, age 76, midline
246.4
Periaquaductal grey, anterior nTPM: 342.9
1947
Male, age 18, unknown
472.2
1795
Male, age 51, unknown
325.9
2502
Female, age 75, unknown
230.6
Periaquaductal grey, dorsal nTPM: 271.7
1840
Male, age 53, unknown
412.3
2850
Male, age 76, both hemispheres
259.3
1831
Male, age 72, unknown
217.2
2464
Female, age 72, unknown
198.0
Periaquaductal grey, lateral nTPM: 289.5
2053
Male, age 18, unknown
382.0
2140
Male, age 76, both hemispheres
264.4
2272
Male, age 74, both hemispheres
222.1
Pretectal area nTPM: 209.1
2825
Male, age 18, unknown
442.1
2224
Female, age 72, unknown
301.8
2273
Male, age 74, both hemispheres
258.5
2407
Male, age 75, both hemispheres
213.7
2316
Male, age 76, right hemisphere
201.1
1816
Male, age 51, unknown
191.7
1944
Female, age 72, unknown
170.7
2667
Female, age 75, unknown
160.7
1815
Male, age 53, unknown
134.3
2007
Male, age 72, unknown
115.9
1817
Female, age 42, unknown
109.6
Red nucleus nTPM: 98.6
2584
Male, age 75, left hemisphere
229.0
2725
Female, age 75, unknown
183.1
2769
Male, age 72, unknown
110.4
2227
Male, age 72, unknown
106.9
2503
Female, age 72, unknown
86.9
2588
Male, age 74, left hemisphere
82.6
1954
Female, age 42, unknown
81.3
1821
Female, age 72, unknown
77.5
2823
Male, age 76, right hemisphere
63.9
1904
Male, age 53, unknown
61.4
1865
Male, age 51, unknown
52.1
2785
Male, age 18, unknown
47.7
Substantia nigra nTPM: 145.0
2583
Male, age 75, right hemisphere
215.0
1941
Male, age 53, unknown
162.6
2590
Female, age 75, unknown
154.6
1851
Male, age 51, unknown
151.7
2241
Male, age 72, unknown
149.7
1889
Female, age 72, unknown
147.7
2699
Male, age 18, unknown
145.4
2665
Male, age 74, both hemispheres
118.7
1916
Female, age 42, unknown
110.0
2409
Female, age 72, unknown
94.3
Superior colliculus nTPM: 205.9
2261
Male, age 18, unknown
348.0
2664
Male, age 75, both hemispheres
317.9
1796
Male, age 53, unknown
253.0
1839
Male, age 51, unknown
239.2
2587
Male, age 74, left hemisphere
197.7
1895
Male, age 76, right hemisphere
158.9
2668
Female, age 75, unknown
145.8
1913
Female, age 42, unknown
141.9
2087
Female, age 72, unknown
138.2
1995
Male, age 72, unknown
118.7
Ventral tegmental area nTPM: 217.1
2021
Male, age 53, unknown
300.0
1942
Male, age 51, unknown
279.7
1915
Female, age 42, unknown
239.1
2223
Female, age 72, unknown
189.2
2218
Male, age 76, both hemispheres
172.6
2410
Female, age 72, unknown
121.8
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
2.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 2.5
Samples: 4
Max nTPM: 3.1
Min nTPM: 2.2
Sample A
Male
3.1
Sample B
Male
2.2
Sample C
Female
2.4
Sample D
Female
2.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
