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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Cells in granular layer:
High
Cells in molecular layer:
High
Purkinje cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
180.5
nTPM
FANTOM5:
6.2
Scaled Tags Per Million
Pig:
116.8
nTPM
Mouse:
1.1
nTPM
Allen mouse:
13.1
Expression energy
CEREBELLUM - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA041189
Purkinje cells
Low
Cells in granular layer
High
Cells in molecular layer
High
CEREBELLUM - HPA Brain RNA-seq
Max nTPM
180.5
Sample id
Sample description
nTPM
Cerebellar cortex nTPM: 180.5
1769
Male, age 76, right hemisphere
280.6
2006
Male, age 61, right hemisphere
255.9
2055
Female, age 91, right hemisphere
159.3
1768
Female, age 72, unknown
159.1
1788
Male, age 55, unknown
153.3
2101
Male, age 74, right hemisphere
152.5
1774
Male, age 80, left hemisphere
144.4
2003
Female, age 85, right hemisphere
138.6
Cerebellar nuclei nTPM: 147.9
2783
Female, age 72, unknown
191.1
1879
Male, age 55, unknown
175.5
1871
Male, age 74, unknown
158.5
2175
Male, age 61, right hemisphere
155.2
2318
Male, age 74, left hemisphere
142.6
2005
Male, age 80, left hemisphere
135.2
2882
Male, age 76, left hemisphere
133.0
1966
Female, age 91, left hemisphere
125.7
2177
Female, age 85, both hemispheres
114.3
Flocculonodular lobe nTPM: 165.3
2004
Male, age 61, right hemisphere
210.4
1767
Male, age 76, left hemisphere
199.7
1792
Male, age 74, unknown
175.0
1765
Male, age 55, unknown
166.3
1771
Male, age 80, left hemisphere
153.0
2176
Female, age 91, right hemisphere
134.5
1835
Female, age 85, right hemisphere
117.9
Vermis nTPM: 153.6
2460
Male, age 61, both hemispheres
253.4
1770
Male, age 76, left hemisphere
210.7
1778
Female, age 91, left hemisphere
137.7
1825
Male, age 74, unknown
137.7
1988
Female, age 85, left hemisphere
137.3
1751
Male, age 74, right hemisphere
135.9
1928
Female, age 72, unknown
133.7
1766
Male, age 55, unknown
125.8
2834
Male, age 80, left hemisphere
110.7
CEREBELLUM - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1.1
Mouse sample
Sample description
nTPM
Cerebellum nTPM: 1.1
Samples: 4
Max nTPM: 2.3
Min nTPM: 0.0
Sample A
Male
2.3
Sample B
Male
1.1
Sample C
Female
0.9
Sample D
Female
0.0
CEREBELLUM - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
