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IMMUNE CELL T-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cell proteome
T-cells
T-CELLS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA:1208.2 nTPM
Monaco:2455.2 nTPM

T-CELLS - Annotated protein expression
Pending normal tissue analysis

T-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM 1208.2
HPA sample nTPM
gdT-cell
nTPM: 1208.2
Samples: 6

Max nTPM: 1478.1
Min nTPM: 837.4
P10809_1007 1151.2
P10809_1022 1303.8
P10809_1041 1390.9
P10809_1060 837.4
P10809_1077 1087.6
P10809_1098 1478.1
MAIT T-cell
nTPM: 178.7
Samples: 6

Max nTPM: 230.8
Min nTPM: 122.9
P10809_1006 158.6
P10809_1024 153.3
P10809_1043 178.4
P10809_1062 230.8
P10809_1083 122.9
P10809_1097 227.9
Memory CD4 T-cell
nTPM: 23.7
Samples: 6

Max nTPM: 59.2
Min nTPM: 6.7
P10809_1014 9.8
P10809_1026 8.8
P10809_1045 14.2
P10809_1064 59.2
P10809_1086 43.4
P10809_1113 6.7
Memory CD8 T-cell
nTPM: 118.8
Samples: 5

Max nTPM: 159.3
Min nTPM: 81.4
P10809_1012 114.9
P10809_1027 129.6
P10809_1046 108.6
P10809_1065 159.3
P10809_1111 81.4
Naive CD4 T-cell
nTPM: 8.0
Samples: 6

Max nTPM: 28.4
Min nTPM: 1.0
P10809_1015 3.8
P10809_1030 1.0
P10809_1049 6.7
P10809_1068 5.8
P10809_1085 28.4
P10809_1112 2.3
Naive CD8 T-cell
nTPM: 79.5
Samples: 6

Max nTPM: 119.4
Min nTPM: 25.9
P10809_1016 25.9
P10809_1031 60.0
P10809_1050 116.8
P10809_1069 119.4
P10809_1087 109.6
P10809_1110 45.1
T-reg
nTPM: 0.5
Samples: 6

Max nTPM: 1.1
Min nTPM: 0.0
P10809_1018 1.1
P10809_1037 0.8
P10809_1056 0.0
P10809_1075 0.7
P10809_1094 0.4
P10809_1106 0.2

T-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max nTPM 2455.2
Monaco sample nTPM
Central memory CD8 T-cell
nTPM: 123.6
Samples: 4

Max nTPM: 179.6
Min nTPM: 67.8
RHH5202_R3573 161.3
RHH5230_R3602 179.6
RHH5259_R3631 85.6
RHH5288_R3660 67.8
Effector memory CD8 T-cell
nTPM: 345.6
Samples: 4

Max nTPM: 507.0
Min nTPM: 150.1
RHH5203_R3574 498.5
RHH5231_R3603 507.0
RHH5260_R3632 226.9
RHH5289_R3661 150.1
MAIT T-cell
nTPM: 531.5
Samples: 4

Max nTPM: 706.2
Min nTPM: 355.3
RHH5233_R3605 706.2
RHH5205_R3576 558.4
RHH5262_R3634 506.1
RHH5297_R3663 355.3
Memory CD4 T-cell TFH
nTPM: 24.8
Samples: 4

Max nTPM: 45.0
Min nTPM: 10.8
RHH5300_R3666 10.8
RHH5236_R3608 16.6
RHH5265_R3637 26.8
RHH5208_R3579 45.0
Memory CD4 T-cell Th1
nTPM: 59.8
Samples: 4

Max nTPM: 70.4
Min nTPM: 40.2
RHH5210_R3581 70.4
RHH5302_R3668 40.2
RHH5238_R3610 70.1
RHH5267_R3639 58.5
Memory CD4 T-cell Th1/Th17
nTPM: 77.9
Samples: 4

Max nTPM: 103.7
Min nTPM: 66.1
RHH5303_R3669 66.1
RHH5211_R3582 103.7
RHH5239_R3611 74.8
RHH5268_R3640 67.0
Memory CD4 T-cell Th17
nTPM: 58.0
Samples: 4

Max nTPM: 93.2
Min nTPM: 31.0
RHH5304_R3670 93.2
RHH5212_R3583 65.5
RHH5240_R3612 31.0
RHH5269_R3641 42.1
Memory CD4 T-cell Th2
nTPM: 43.0
Samples: 4

Max nTPM: 54.6
Min nTPM: 28.1
RHH5305_R3671 28.1
RHH5213_R3584 53.8
RHH5241_R3613 54.6
RHH5270_R3642 35.4
Naive CD4 T-cell
nTPM: 36.2
Samples: 4

Max nTPM: 59.1
Min nTPM: 20.1
RHH5306_R3672 20.1
RHH5214_R3585 31.2
RHH5242_R3614 59.1
RHH5271_R3643 34.5
Naive CD8 T-cell
nTPM: 19.0
Samples: 4

Max nTPM: 24.2
Min nTPM: 7.2
RHH5201_R3572 22.5
RHH5229_R3601 24.2
RHH5258_R3630 22.0
RHH5287_R3659 7.2
Non-Vd2 gdTCR
nTPM: 1236.9
Samples: 4

Max nTPM: 1929.7
Min nTPM: 916.0
RHH5235_R3607 1040.8
RHH5264_R3636 1061.0
RHH5207_R3578 1929.7
RHH5299_R3665 916.0
T-reg
nTPM: 20.3
Samples: 4

Max nTPM: 37.3
Min nTPM: 12.2
RHH5301_R3667 12.2
RHH5237_R3609 17.6
RHH5266_R3638 14.2
RHH5209_R3580 37.3
Terminal effector memory CD4 T-cell
nTPM: 630.3
Samples: 2

Max nTPM: 869.1
Min nTPM: 391.4
RHH5243_R3615 869.1
RHH5272_R3644 391.4
Terminal effector memory CD8 T-cell
nTPM: 592.2
Samples: 4

Max nTPM: 908.1
Min nTPM: 399.5
RHH5232_R3604 399.5
RHH5204_R3575 654.3
RHH5261_R3633 908.1
RHH5296_R3662 406.8
Vd2 gdTCR
nTPM: 2455.3
Samples: 4

Max nTPM: 3250.3
Min nTPM: 1638.4
RHH5234_R3606 2933.1
RHH5206_R3577 3250.3
RHH5263_R3635 1999.3
RHH5298_R3664 1638.4

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