MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:25.6 nTPM
GTEx:10.4 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:10.1 nTPM
Mouse:8.9 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
2586 Male, age 75, left hemisphere 34.8
1830 Male, age 51, unknown 24.7
2828 Female, age 72, unknown 24.7
1833 Male, age 53, unknown 24.6
1870 Female, age 42, unknown 24.5
2219 Male, age 76, both hemispheres 23.8
2666 Male, age 74, left hemisphere 23.7
2411 Female, age 72, unknown 23.2
1827 Male, age 72, unknown 22.8
2019 Male, age 18, unknown 19.7
Dorsal raphe nucleus
nTPM: 20.0
2750 Male, age 76, both hemispheres 26.2
2047 Male, age 72, unknown 21.2
2298 Female, age 72, unknown 18.5
1828 Male, age 53, unknown 18.1
2016 Female, age 72, unknown 15.7
Inferior colliculus
nTPM: 19.8
2849 Male, age 72, unknown 23.3
1890 Male, age 53, unknown 20.3
1848 Female, age 42, unknown 18.1
2097 Female, age 72, unknown 17.3
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Periaquaductal grey, anterior
nTPM: 22.5
2502 Female, age 75, unknown 25.4
1795 Male, age 51, unknown 23.5
1947 Male, age 18, unknown 18.7
Periaquaductal grey, dorsal
nTPM: 20.6
1831 Male, age 72, unknown 23.5
2464 Female, age 72, unknown 21.7
2850 Male, age 76, both hemispheres 19.4
1840 Male, age 53, unknown 17.8
Periaquaductal grey, lateral
nTPM: 20.6
2053 Male, age 18, unknown 23.8
2272 Male, age 74, both hemispheres 19.6
2140 Male, age 76, both hemispheres 18.5
Pretectal area
nTPM: 21.6
2407 Male, age 75, both hemispheres 30.0
2825 Male, age 18, unknown 25.8
1815 Male, age 53, unknown 22.9
2667 Female, age 75, unknown 22.3
2224 Female, age 72, unknown 21.6
1816 Male, age 51, unknown 21.4
2316 Male, age 76, right hemisphere 20.2
2007 Male, age 72, unknown 20.1
1817 Female, age 42, unknown 18.1
1944 Female, age 72, unknown 17.9
2273 Male, age 74, both hemispheres 17.0
Red nucleus
nTPM: 24.5
2584 Male, age 75, left hemisphere 34.1
2588 Male, age 74, left hemisphere 29.4
2823 Male, age 76, right hemisphere 29.3
2769 Male, age 72, unknown 27.1
1904 Male, age 53, unknown 24.8
1865 Male, age 51, unknown 24.5
2227 Male, age 72, unknown 24.4
2785 Male, age 18, unknown 22.2
2503 Female, age 72, unknown 21.1
1954 Female, age 42, unknown 19.1
2725 Female, age 75, unknown 19.1
1821 Female, age 72, unknown 18.5
Substantia nigra
nTPM: 19.1
2583 Male, age 75, right hemisphere 26.8
2699 Male, age 18, unknown 22.2
2590 Female, age 75, unknown 21.6
2665 Male, age 74, both hemispheres 21.0
1941 Male, age 53, unknown 18.9
1851 Male, age 51, unknown 18.4
1889 Female, age 72, unknown 18.3
2409 Female, age 72, unknown 15.6
1916 Female, age 42, unknown 15.1
2241 Male, age 72, unknown 13.6
Superior colliculus
nTPM: 22.9
2664 Male, age 75, both hemispheres 31.5
1913 Female, age 42, unknown 27.6
1796 Male, age 53, unknown 23.7
2261 Male, age 18, unknown 22.0
1895 Male, age 76, right hemisphere 21.7
2587 Male, age 74, left hemisphere 21.2
1995 Male, age 72, unknown 21.1
2668 Female, age 75, unknown 20.9
1839 Male, age 51, unknown 19.9
2087 Female, age 72, unknown 19.6
Ventral tegmental area
nTPM: 22.5
2223 Female, age 72, unknown 32.4
1942 Male, age 51, unknown 23.6
2021 Male, age 53, unknown 22.7
2218 Male, age 76, both hemispheres 22.1
1915 Female, age 42, unknown 17.5
2410 Female, age 72, unknown 16.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.4
Samples: 139

Max nTPM: 34.6
Min nTPM: 2.6
Std nTPM: 4.9
Median nTPM: 9.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 29.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 23.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 20.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 19.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 17.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 16.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 13.3
Min nTPM: 6.8
Sample A Female 8.4
Sample B Female 6.8
Sample C Male 13.3
Sample D Male 10.3
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 14.6
Min nTPM: 7.2
Sample A Female 8.4
Sample B Female 7.2
Sample C Male 14.6
Sample D Male 9.9
Periaqueductal gray
nTPM: 6.5
Samples: 3

Max nTPM: 7.2
Min nTPM: 5.9
Sample B Female 5.9
Sample C Male 7.2
Sample D Male 6.3
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 8.6
Min nTPM: 4.9
Sample A Female 5.6
Sample B Female 4.9
Sample C Male 7.0
Sample D Male 8.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.7
Sample A Male 10.6
Sample B Male 7.7
Sample C Female 8.2
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
74583174 Antisense, RP_051214_02_F12, Mouse strain C57BL/6J (56 days, male) 7.8
68843937 Antisense, RP_050217_02_E11, Mouse strain C57BL/6J (56 days, male) 5.5

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