HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:114.9 nTPM
HPA Brain:68.4 nTPM
GTEx:114.9 nTPM
FANTOM5:113.3 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:171.8 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA076020
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 68.4
Sample id Sample description nTPM
Hippocampus
nTPM: 56.0
1898 Male, age 80, left hemisphere 80.5
2529 Female, age 94, left hemisphere 59.1
2621 Female, age 67, right hemisphere 53.5
2148 Female, age 91, left hemisphere 50.6
1911 Female, age 85, right hemisphere 48.6
1855 Male, age 76, left hemisphere 43.9
Dentate gyrus
nTPM: 59.2
2010 Male, age 76, both hemispheres 65.9
1927 Female, age 91, both hemispheres 65.4
2530 Female, age 94, left hemisphere 61.3
2246 Female, age 85, both hemispheres 57.0
2528 Male, age 74, both hemispheres 56.6
2531 Female, age 67, both hemispheres 48.8
Entorhinal gyrus
nTPM: 51.4
2764 Male, age 80, right hemisphere 68.0
1938 Female, age 85, left hemisphere 56.0
1787 Male, age 76, left hemisphere 52.5
2117 Female, age 91, right hemisphere 47.8
2613 Female, age 94, left hemisphere 44.6
2686 Male, age 75, right hemisphere 39.4
Hippocampus, CA1
nTPM: 68.4
2749 Male, age 80, left hemisphere 103.9
2527 Male, age 74, both hemispheres 70.4
1873 Female, age 85, both hemispheres 66.5
2082 Female, age 91, right hemisphere 52.0
2045 Male, age 76, both hemispheres 49.0
Hippocampus, CA2
nTPM: 65.0
1892 Male, age 76, both hemispheres 81.3
2249 Male, age 74, both hemispheres 80.8
1963 Male, age 80, left hemisphere 77.0
2437 Female, age 94, left hemisphere 55.2
2113 Female, age 91, right hemisphere 48.8
1940 Female, age 85, left hemisphere 47.1
Hippocampus, CA3
nTPM: 61.2
2436 Male, age 74, both hemispheres 78.2
2137 Male, age 80, left hemisphere 76.8
1867 Male, age 76, both hemispheres 67.3
2620 Female, age 94, left hemisphere 57.4
1891 Female, age 85, both hemispheres 50.8
2861 Female, age 67, both hemispheres 36.7
Parahippocampal cortex
nTPM: 55.3
1850 Male, age 80, both hemispheres 70.1
2250 Female, age 67, right hemisphere 67.7
1990 Female, age 91, right hemisphere 65.3
2245 Female, age 91, both hemispheres 61.8
1933 Female, age 85, both hemispheres 58.6
2018 Male, age 76, both hemispheres 53.7
2532 Female, age 72, left hemisphere 53.0
2692 Male, age 74, both hemispheres 46.9
2693 Female, age 94, both hemispheres 41.8
2622 Female, age 67, right hemisphere 34.2
Perirhinal gyrus
nTPM: 67.5
1847 Female, age 91, left hemisphere 88.6
1794 Male, age 80, right hemisphere 78.5
1841 Female, age 85, right hemisphere 67.2
2521 Female, age 94, right hemisphere 53.0
2848 Male, age 76, right hemisphere 50.4
Subiculum
nTPM: 54.2
1977 Female, age 85, both hemispheres 68.6
1901 Male, age 80, both hemispheres 63.5
2619 Male, age 74, both hemispheres 49.8
2729 Female, age 91, right hemisphere 49.7
2438 Female, age 94, left hemisphere 48.1
2042 Male, age 76, both hemispheres 45.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 114.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 114.9
Samples: 197

Max nTPM: 339.8
Min nTPM: 50.0
Std nTPM: 42.8
Median nTPM: 107.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 339.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 271.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 243.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 238.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 236.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 207.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 197.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 188.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 187.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 180.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 179.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 113.3
FF:10169-103B7 60 years, female 165.1
FF:10153-102I9 76 years, female 61.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Subiculum
nTPM: 22.9
Samples: 4

Max nTPM: 29.1
Min nTPM: 20.2
Sample A Female 29.1
Sample B Female 21.2
Sample C Male 21.2
Sample D Male 20.2
Dorsal hippocampus
nTPM: 28.1
Samples: 4

Max nTPM: 37.1
Min nTPM: 22.3
Sample A Female 37.1
Sample B Female 26.9
Sample C Male 26.2
Sample D Male 22.3
Entorhinal cortex
nTPM: 23.9
Samples: 4

Max nTPM: 27.2
Min nTPM: 20.1
Sample A Female 27.2
Sample B Female 26.6
Sample C Male 21.5
Sample D Male 20.1
Ventral hippocampus
nTPM: 26.3
Samples: 4

Max nTPM: 30.2
Min nTPM: 18.6
Sample A Female 30.2
Sample B Female 18.6
Sample C Male 28.9
Sample D Male 27.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 171.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 147.7
Samples: 4

Max nTPM: 167.6
Min nTPM: 132.7
Sample A Male 141.0
Sample B Male 149.6
Sample C Female 167.6
Sample D Female 132.7
Hippocampal formation
nTPM: 171.9
Samples: 4

Max nTPM: 191.6
Min nTPM: 151.9
Sample A Male 191.6
Sample B Male 170.5
Sample C Female 151.9
Sample D Female 173.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
69174341 Antisense, RP_050329_02_B11, Mouse strain C57BL/6J (56 days, male) 1.6

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