MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:129.5 nTPM
HPA Brain:66.1 nTPM
GTEx:129.5 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:36.4 nTPM
Mouse:173.9 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.0
2019 Male, age 18, unknown 75.5
2411 Female, age 72, unknown 58.8
1827 Male, age 72, unknown 55.8
2219 Male, age 76, both hemispheres 53.6
1870 Female, age 42, unknown 50.8
2828 Female, age 72, unknown 48.9
2586 Male, age 75, left hemisphere 48.3
1833 Male, age 53, unknown 42.8
1830 Male, age 51, unknown 40.9
2666 Male, age 74, left hemisphere 34.2
Dorsal raphe nucleus
nTPM: 64.0
2298 Female, age 72, unknown 92.8
1828 Male, age 53, unknown 63.4
2750 Male, age 76, both hemispheres 59.0
2047 Male, age 72, unknown 58.5
2016 Female, age 72, unknown 46.5
Inferior colliculus
nTPM: 55.3
2097 Female, age 72, unknown 67.3
1890 Male, age 53, unknown 61.6
1848 Female, age 42, unknown 52.1
2849 Male, age 72, unknown 40.1
Median raphe nucleus
nTPM: 59.0
2220 Male, age 76, midline 59.0
Periaquaductal grey, anterior
nTPM: 57.8
1795 Male, age 51, unknown 61.9
1947 Male, age 18, unknown 56.5
2502 Female, age 75, unknown 54.9
Periaquaductal grey, dorsal
nTPM: 45.1
1840 Male, age 53, unknown 49.5
2850 Male, age 76, both hemispheres 44.2
2464 Female, age 72, unknown 43.9
1831 Male, age 72, unknown 42.7
Periaquaductal grey, lateral
nTPM: 50.6
2272 Male, age 74, both hemispheres 62.8
2140 Male, age 76, both hemispheres 46.1
2053 Male, age 18, unknown 42.8
Pretectal area
nTPM: 66.1
2007 Male, age 72, unknown 85.9
1816 Male, age 51, unknown 81.9
1817 Female, age 42, unknown 78.0
1944 Female, age 72, unknown 74.3
2273 Male, age 74, both hemispheres 70.0
2667 Female, age 75, unknown 66.2
2224 Female, age 72, unknown 66.0
1815 Male, age 53, unknown 59.5
2316 Male, age 76, right hemisphere 51.1
2407 Male, age 75, both hemispheres 49.3
2825 Male, age 18, unknown 44.2
Red nucleus
nTPM: 54.4
2725 Female, age 75, unknown 69.6
1821 Female, age 72, unknown 67.9
2785 Male, age 18, unknown 66.7
2227 Male, age 72, unknown 55.5
2769 Male, age 72, unknown 54.3
2823 Male, age 76, right hemisphere 53.7
1865 Male, age 51, unknown 52.2
2503 Female, age 72, unknown 52.0
1904 Male, age 53, unknown 50.6
1954 Female, age 42, unknown 49.7
2588 Male, age 74, left hemisphere 42.8
2584 Male, age 75, left hemisphere 38.2
Substantia nigra
nTPM: 64.1
1916 Female, age 42, unknown 79.8
2241 Male, age 72, unknown 79.1
1889 Female, age 72, unknown 77.9
1851 Male, age 51, unknown 75.1
1941 Male, age 53, unknown 72.5
2409 Female, age 72, unknown 55.2
2665 Male, age 74, both hemispheres 53.7
2583 Male, age 75, right hemisphere 52.1
2590 Female, age 75, unknown 47.8
2699 Male, age 18, unknown 47.4
Superior colliculus
nTPM: 53.6
2087 Female, age 72, unknown 70.6
2261 Male, age 18, unknown 63.9
1895 Male, age 76, right hemisphere 63.1
1796 Male, age 53, unknown 60.9
2587 Male, age 74, left hemisphere 54.6
2668 Female, age 75, unknown 54.5
1839 Male, age 51, unknown 46.8
1913 Female, age 42, unknown 46.6
1995 Male, age 72, unknown 40.6
2664 Male, age 75, both hemispheres 34.3
Ventral tegmental area
nTPM: 58.6
1915 Female, age 42, unknown 68.4
2218 Male, age 76, both hemispheres 67.7
2410 Female, age 72, unknown 66.8
2223 Female, age 72, unknown 53.4
1942 Male, age 51, unknown 49.8
2021 Male, age 53, unknown 45.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 129.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 129.5
Samples: 139

Max nTPM: 318.7
Min nTPM: 55.7
Std nTPM: 44.4
Median nTPM: 120.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 318.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 257.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 255.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 248.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 236.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 235.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 234.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 218.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 212.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 206.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 205.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.5
Samples: 4

Max nTPM: 39.1
Min nTPM: 19.6
Sample A Female 39.1
Sample B Female 21.2
Sample C Male 30.2
Sample D Male 19.6
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 39.7
Min nTPM: 26.7
Sample A Female 28.2
Sample B Female 26.7
Sample C Male 39.7
Sample D Male 30.8
Periaqueductal gray
nTPM: 24.5
Samples: 3

Max nTPM: 27.9
Min nTPM: 22.3
Sample B Female 23.2
Sample C Male 27.9
Sample D Male 22.3
Superior colliculi
nTPM: 36.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 27.2
Sample A Female 41.9
Sample B Female 27.2
Sample C Male 46.1
Sample D Male 30.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 173.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 173.9
Samples: 4

Max nTPM: 185.8
Min nTPM: 164.2
Sample A Male 175.7
Sample B Male 185.8
Sample C Female 169.9
Sample D Female 164.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
69174341 Antisense, RP_050329_02_B11, Mouse strain C57BL/6J (56 days, male) 2.0

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