MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:167.2 nTPM
HPA Brain:294.6 nTPM
GTEx:167.2 nTPM
FANTOM5:71.6 Scaled Tags Per Million
Pig:190.7 nTPM
Mouse:17.2 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 294.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 189.3
2666 Male, age 74, left hemisphere 274.6
2586 Male, age 75, left hemisphere 269.6
1827 Male, age 72, unknown 218.3
1870 Female, age 42, unknown 190.9
2411 Female, age 72, unknown 178.9
2828 Female, age 72, unknown 177.1
1833 Male, age 53, unknown 159.9
2219 Male, age 76, both hemispheres 155.9
1830 Male, age 51, unknown 146.1
2019 Male, age 18, unknown 121.8
Dorsal raphe nucleus
nTPM: 232.8
2298 Female, age 72, unknown 320.8
2047 Male, age 72, unknown 282.0
2750 Male, age 76, both hemispheres 210.9
1828 Male, age 53, unknown 189.8
2016 Female, age 72, unknown 160.6
Inferior colliculus
nTPM: 162.7
2849 Male, age 72, unknown 179.0
2097 Female, age 72, unknown 171.6
1848 Female, age 42, unknown 164.8
1890 Male, age 53, unknown 135.5
Median raphe nucleus
nTPM: 294.6
2220 Male, age 76, midline 294.6
Periaquaductal grey, anterior
nTPM: 246.6
1947 Male, age 18, unknown 272.3
1795 Male, age 51, unknown 261.9
2502 Female, age 75, unknown 205.7
Periaquaductal grey, dorsal
nTPM: 200.1
1840 Male, age 53, unknown 247.4
2850 Male, age 76, both hemispheres 223.4
2464 Female, age 72, unknown 171.5
1831 Male, age 72, unknown 158.1
Periaquaductal grey, lateral
nTPM: 174.0
2140 Male, age 76, both hemispheres 195.5
2053 Male, age 18, unknown 175.6
2272 Male, age 74, both hemispheres 150.9
Pretectal area
nTPM: 191.0
2224 Female, age 72, unknown 272.5
2825 Male, age 18, unknown 229.3
1816 Male, age 51, unknown 218.8
2007 Male, age 72, unknown 208.6
1817 Female, age 42, unknown 199.2
1944 Female, age 72, unknown 188.9
2667 Female, age 75, unknown 186.6
1815 Male, age 53, unknown 176.1
2273 Male, age 74, both hemispheres 148.7
2407 Male, age 75, both hemispheres 145.9
2316 Male, age 76, right hemisphere 126.1
Red nucleus
nTPM: 126.3
2584 Male, age 75, left hemisphere 193.2
1954 Female, age 42, unknown 134.1
2785 Male, age 18, unknown 133.0
2725 Female, age 75, unknown 132.4
1821 Female, age 72, unknown 131.5
2227 Male, age 72, unknown 122.8
2769 Male, age 72, unknown 119.7
1904 Male, age 53, unknown 118.1
2588 Male, age 74, left hemisphere 113.6
2503 Female, age 72, unknown 112.2
1865 Male, age 51, unknown 108.0
2823 Male, age 76, right hemisphere 97.6
Substantia nigra
nTPM: 190.3
1916 Female, age 42, unknown 251.0
1851 Male, age 51, unknown 212.9
2665 Male, age 74, both hemispheres 212.3
1941 Male, age 53, unknown 211.9
2241 Male, age 72, unknown 209.2
1889 Female, age 72, unknown 190.1
2583 Male, age 75, right hemisphere 173.4
2699 Male, age 18, unknown 162.9
2409 Female, age 72, unknown 147.7
2590 Female, age 75, unknown 132.0
Superior colliculus
nTPM: 180.5
2668 Female, age 75, unknown 275.6
2664 Male, age 75, both hemispheres 243.0
1796 Male, age 53, unknown 212.8
2261 Male, age 18, unknown 203.1
1839 Male, age 51, unknown 181.2
2087 Female, age 72, unknown 173.1
2587 Male, age 74, left hemisphere 151.3
1895 Male, age 76, right hemisphere 135.3
1913 Female, age 42, unknown 119.1
1995 Male, age 72, unknown 110.8
Ventral tegmental area
nTPM: 202.1
1915 Female, age 42, unknown 224.8
2021 Male, age 53, unknown 210.3
2410 Female, age 72, unknown 199.7
1942 Male, age 51, unknown 196.0
2218 Male, age 76, both hemispheres 193.9
2223 Female, age 72, unknown 187.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 167.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.2
Samples: 139

Max nTPM: 375.1
Min nTPM: 52.1
Std nTPM: 65.7
Median nTPM: 157.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 375.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 327.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 314.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 305.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 298.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 296.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 287.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 285.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 280.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 273.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 271.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.6
FF:10158-103A5 76 years, female 71.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 190.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 190.7
Samples: 4

Max nTPM: 289.9
Min nTPM: 58.7
Sample A Female 281.1
Sample B Female 133.2
Sample C Male 289.9
Sample D Male 58.7
Midbrain
nTPM: 136.6
Samples: 4

Max nTPM: 184.3
Min nTPM: 67.0
Sample A Female 67.0
Sample B Female 147.3
Sample C Male 147.7
Sample D Male 184.3
Periaqueductal gray
nTPM: 172.1
Samples: 3

Max nTPM: 229.8
Min nTPM: 132.4
Sample B Female 132.4
Sample C Male 229.8
Sample D Male 154.0
Superior colliculi
nTPM: 124.6
Samples: 4

Max nTPM: 172.3
Min nTPM: 94.4
Sample A Female 172.3
Sample B Female 94.4
Sample C Male 103.0
Sample D Male 128.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 22.1
Min nTPM: 13.9
Sample A Male 22.1
Sample B Male 13.9
Sample C Female 14.0
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68301682 Antisense, RP_041130_01_F06, Mouse strain C57BL/6J (56 days, male) 4.4
70194606 Antisense, RP_050517_01_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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