MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.0 nTPM
HPA Brain:31.5 nTPM
GTEx:22.0 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:0.0 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.6
2586 Male, age 75, left hemisphere 32.2
2219 Male, age 76, both hemispheres 30.5
2828 Female, age 72, unknown 28.5
2411 Female, age 72, unknown 26.0
2019 Male, age 18, unknown 24.1
1827 Male, age 72, unknown 22.8
1870 Female, age 42, unknown 21.4
1830 Male, age 51, unknown 20.6
2666 Male, age 74, left hemisphere 20.4
1833 Male, age 53, unknown 19.6
Dorsal raphe nucleus
nTPM: 24.8
2298 Female, age 72, unknown 29.5
2047 Male, age 72, unknown 26.9
2750 Male, age 76, both hemispheres 25.4
1828 Male, age 53, unknown 23.2
2016 Female, age 72, unknown 18.9
Inferior colliculus
nTPM: 20.8
1890 Male, age 53, unknown 24.5
2097 Female, age 72, unknown 21.4
2849 Male, age 72, unknown 20.0
1848 Female, age 42, unknown 17.2
Median raphe nucleus
nTPM: 28.5
2220 Male, age 76, midline 28.5
Periaquaductal grey, anterior
nTPM: 31.5
1795 Male, age 51, unknown 34.4
1947 Male, age 18, unknown 33.0
2502 Female, age 75, unknown 27.1
Periaquaductal grey, dorsal
nTPM: 24.9
2850 Male, age 76, both hemispheres 27.9
2464 Female, age 72, unknown 25.7
1840 Male, age 53, unknown 23.8
1831 Male, age 72, unknown 22.3
Periaquaductal grey, lateral
nTPM: 22.1
2272 Male, age 74, both hemispheres 23.2
2053 Male, age 18, unknown 21.6
2140 Male, age 76, both hemispheres 21.4
Pretectal area
nTPM: 30.6
1816 Male, age 51, unknown 45.9
1944 Female, age 72, unknown 38.9
2007 Male, age 72, unknown 36.7
1817 Female, age 42, unknown 36.2
1815 Male, age 53, unknown 35.4
2667 Female, age 75, unknown 31.0
2224 Female, age 72, unknown 28.8
2407 Male, age 75, both hemispheres 22.2
2316 Male, age 76, right hemisphere 21.3
2273 Male, age 74, both hemispheres 20.4
2825 Male, age 18, unknown 19.7
Red nucleus
nTPM: 22.0
2725 Female, age 75, unknown 26.5
2785 Male, age 18, unknown 26.3
1821 Female, age 72, unknown 23.7
2823 Male, age 76, right hemisphere 23.0
2503 Female, age 72, unknown 22.6
2769 Male, age 72, unknown 22.6
2588 Male, age 74, left hemisphere 22.4
2584 Male, age 75, left hemisphere 21.3
1904 Male, age 53, unknown 20.8
2227 Male, age 72, unknown 20.4
1865 Male, age 51, unknown 18.5
1954 Female, age 42, unknown 15.3
Substantia nigra
nTPM: 30.6
1916 Female, age 42, unknown 45.3
1851 Male, age 51, unknown 35.3
2409 Female, age 72, unknown 33.1
2590 Female, age 75, unknown 32.3
2665 Male, age 74, both hemispheres 31.8
1889 Female, age 72, unknown 28.3
1941 Male, age 53, unknown 27.6
2241 Male, age 72, unknown 27.0
2699 Male, age 18, unknown 25.3
2583 Male, age 75, right hemisphere 19.6
Superior colliculus
nTPM: 25.6
2087 Female, age 72, unknown 38.6
2261 Male, age 18, unknown 35.0
1796 Male, age 53, unknown 32.3
1913 Female, age 42, unknown 26.0
1995 Male, age 72, unknown 25.1
2664 Male, age 75, both hemispheres 24.1
2587 Male, age 74, left hemisphere 20.6
2668 Female, age 75, unknown 20.6
1895 Male, age 76, right hemisphere 18.6
1839 Male, age 51, unknown 15.0
Ventral tegmental area
nTPM: 31.3
2410 Female, age 72, unknown 36.1
2218 Male, age 76, both hemispheres 34.6
1942 Male, age 51, unknown 34.4
1915 Female, age 42, unknown 32.7
2021 Male, age 53, unknown 25.5
2223 Female, age 72, unknown 24.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.0
Samples: 139

Max nTPM: 52.0
Min nTPM: 4.0
Std nTPM: 9.3
Median nTPM: 20.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 52.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 50.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 48.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 40.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 38.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 38.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 37.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 37.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 37.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 37.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.4
FF:10158-103A5 76 years, female 29.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 11.1
Min nTPM: 5.4
Sample A Female 11.1
Sample B Female 6.5
Sample C Male 7.9
Sample D Male 5.4
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 11.1
Min nTPM: 7.6
Sample A Female 8.6
Sample B Female 8.0
Sample C Male 11.1
Sample D Male 7.6
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 9.4
Min nTPM: 7.2
Sample B Female 9.3
Sample C Male 9.4
Sample D Male 7.2
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 10.8
Min nTPM: 6.3
Sample A Female 9.5
Sample B Female 6.3
Sample C Male 10.8
Sample D Male 9.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69113787 Antisense, RP_050316_02_G07, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org