MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.3 nTPM
HPA Brain:170.1 nTPM
GTEx:56.3 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Pig:130.3 nTPM
Mouse:161.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 170.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.2
2666 Male, age 74, left hemisphere 215.2
2219 Male, age 76, both hemispheres 134.2
1827 Male, age 72, unknown 126.8
2828 Female, age 72, unknown 110.1
1870 Female, age 42, unknown 95.6
2411 Female, age 72, unknown 89.9
1833 Male, age 53, unknown 85.9
2586 Male, age 75, left hemisphere 75.6
1830 Male, age 51, unknown 75.4
2019 Male, age 18, unknown 73.1
Dorsal raphe nucleus
nTPM: 96.2
2298 Female, age 72, unknown 123.9
2047 Male, age 72, unknown 106.4
2750 Male, age 76, both hemispheres 96.7
1828 Male, age 53, unknown 89.0
2016 Female, age 72, unknown 65.0
Inferior colliculus
nTPM: 112.9
2849 Male, age 72, unknown 140.3
1848 Female, age 42, unknown 119.1
2097 Female, age 72, unknown 112.9
1890 Male, age 53, unknown 79.1
Median raphe nucleus
nTPM: 170.1
2220 Male, age 76, midline 170.1
Periaquaductal grey, anterior
nTPM: 140.7
2502 Female, age 75, unknown 162.8
1795 Male, age 51, unknown 134.4
1947 Male, age 18, unknown 124.9
Periaquaductal grey, dorsal
nTPM: 98.6
1840 Male, age 53, unknown 114.8
2850 Male, age 76, both hemispheres 107.9
2464 Female, age 72, unknown 93.0
1831 Male, age 72, unknown 78.5
Periaquaductal grey, lateral
nTPM: 82.1
2140 Male, age 76, both hemispheres 90.5
2053 Male, age 18, unknown 87.5
2272 Male, age 74, both hemispheres 68.3
Pretectal area
nTPM: 111.9
1816 Male, age 51, unknown 160.2
2667 Female, age 75, unknown 132.1
2007 Male, age 72, unknown 131.8
1944 Female, age 72, unknown 131.2
2224 Female, age 72, unknown 128.3
1817 Female, age 42, unknown 127.2
2825 Male, age 18, unknown 107.7
1815 Male, age 53, unknown 107.6
2407 Male, age 75, both hemispheres 79.9
2316 Male, age 76, right hemisphere 79.1
2273 Male, age 74, both hemispheres 45.7
Red nucleus
nTPM: 59.2
2584 Male, age 75, left hemisphere 80.2
2785 Male, age 18, unknown 78.9
1954 Female, age 42, unknown 65.9
1821 Female, age 72, unknown 63.7
2769 Male, age 72, unknown 63.4
2227 Male, age 72, unknown 60.7
2503 Female, age 72, unknown 58.1
2823 Male, age 76, right hemisphere 56.5
1865 Male, age 51, unknown 51.7
1904 Male, age 53, unknown 48.0
2588 Male, age 74, left hemisphere 46.7
2725 Female, age 75, unknown 36.7
Substantia nigra
nTPM: 91.7
1941 Male, age 53, unknown 138.8
1916 Female, age 42, unknown 131.5
1889 Female, age 72, unknown 115.6
2665 Male, age 74, both hemispheres 107.0
1851 Male, age 51, unknown 92.4
2699 Male, age 18, unknown 84.2
2241 Male, age 72, unknown 82.2
2409 Female, age 72, unknown 64.8
2583 Male, age 75, right hemisphere 57.4
2590 Female, age 75, unknown 43.4
Superior colliculus
nTPM: 112.7
2668 Female, age 75, unknown 225.9
1796 Male, age 53, unknown 138.1
1895 Male, age 76, right hemisphere 120.1
2261 Male, age 18, unknown 114.7
1839 Male, age 51, unknown 110.5
2087 Female, age 72, unknown 109.6
2664 Male, age 75, both hemispheres 105.6
2587 Male, age 74, left hemisphere 81.3
1913 Female, age 42, unknown 67.1
1995 Male, age 72, unknown 54.3
Ventral tegmental area
nTPM: 100.9
2218 Male, age 76, both hemispheres 124.3
1915 Female, age 42, unknown 109.3
2223 Female, age 72, unknown 106.9
1942 Male, age 51, unknown 93.4
2410 Female, age 72, unknown 87.2
2021 Male, age 53, unknown 84.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.3
Samples: 139

Max nTPM: 339.5
Min nTPM: 2.6
Std nTPM: 53.2
Median nTPM: 38.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 339.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 238.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 217.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 199.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 151.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 150.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 144.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 142.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 142.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 141.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 139.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.0
FF:10158-103A5 76 years, female 3.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 130.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.6
Samples: 4

Max nTPM: 139.4
Min nTPM: 25.3
Sample A Female 139.4
Sample B Female 64.8
Sample C Male 136.8
Sample D Male 25.3
Midbrain
nTPM: 124.1
Samples: 4

Max nTPM: 217.2
Min nTPM: 27.9
Sample A Female 27.9
Sample B Female 84.6
Sample C Male 217.2
Sample D Male 166.7
Periaqueductal gray
nTPM: 104.0
Samples: 3

Max nTPM: 131.1
Min nTPM: 90.0
Sample B Female 90.9
Sample C Male 131.1
Sample D Male 90.0
Superior colliculi
nTPM: 130.3
Samples: 4

Max nTPM: 165.6
Min nTPM: 51.2
Sample A Female 150.5
Sample B Female 51.2
Sample C Male 165.6
Sample D Male 154.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 161.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 161.1
Samples: 4

Max nTPM: 180.3
Min nTPM: 147.2
Sample A Male 147.2
Sample B Male 164.2
Sample C Female 180.3
Sample D Female 152.6

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